BAC Information

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BAC

Clone NameMSMg01-462F21
ChromosomeX (Build37)
Map Location 13,842,547 - 13,842,948
singlet/doubletsinglet
Overlap genenone
Upstream geneDdx3x, LOC385326, LOC634019, LOC668990, LOC100043947, LOC100043948, Nyx, LOC675416, Cask, Gpr34, Gpr82, LOC385327, EG385328
Downstream geneLOC668991, 4930403L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462F21.T7 (MSMg01no462_f21.b1)MSMg01-462F21.TJ (MSMg01no462_f21.g1)
ACCAG547270AG547271
length755778
length of high quality
(start - end)		405 (51 - 455)442 (79 - 520)
definitionCHROMAT_FILE: MSMg01no462_f21.b1 PHD_FILE: MSMg01no462_f21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:21 2005CHROMAT_FILE: MSMg01no462_f21.g1 PHD_FILE: MSMg01no462_f21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTGACCATTCCATTTTGGGCTCCCTTCACTCTATGTGTTC
TTAAGCCAATAATTCATTCTTTGTTTTCCCGGATGTGAGAGATAAAGGTG
AAGAGCATTGCTGCATTCCTAAACACTTTAGAGTGAAATCAAGTTGGTTC
TGGTATCTAGGCAACAAGATTTCAGATAGGAGTGGTAATGAGGAATGGGT
GTGGACCCACCTGGCTCCCTGTCATTTGGTATGTGTGATAGGAAAATCTG
ATGAGGTATGAAATGGTGCTTTGTTCTCATGATATTTTTACCTCTTGGAT
TCCAAGGAAGTTTGCTAAGAGTTCATTTCTCCTGTCTTGGGGGAGTTGAA
GTCCTAGGGTTAAGTACCCCACAGTGCTCAGCTTTCTTTCATTCTCTTAT
GTCAAAGCCATGCCATAGTGTTACAGGTTGAGGAAAGAATGGCTTTTCTT
TTATAATTTGTTATTAAATAAGTCAAATACTTTTCTTAATTGATAGAGTT
TTTTGGCGCATTTTGTTCCCCCTAAGGAATCTTCTTACTTGCCCAGGAAT
TTACTGCAACTATATTGCTGAACTTGTTTTTAACACTTTCTTCTCCTCTC
TGTTTTCCTTAATTTTCTTCTTTTTTATTTACATGTTTTTTTTTATGATT
TAATTACTACTAATCTCTCCTAACCGATAGTTTCCCTCTCCTCTTTTCTC
TACCG

CCCCTCCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGACTGGG
AGGAAGAAGCAGCTCATTATGAGAAAAAAGGGTACCAGCCAGGTAAAGTG
CTAGCTAATCAGTTAAGGAAGCCAAAAGCGGCTGGCGAAGGCCAGTTTGC
TGATTGGCCTCAGGGCAGTCGGCTTCAAGGTCCGCCCTATGCGGAGTCCC
CGCCCTGCGTAGTGCGTCAGCCCTGCGCAGAGAGACAGTGCGCAGAGAGG
CAGTGCGCAGACTCATTCATTCCCAGAGAGGAACAAAGGAAAATACAACA
GGCATTTCCGGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACGCTCCGG
TAGAATACTTACAAATTAAAGAACTTGCCGAGTCGGTCCGTAAATATGGA
ACCAATGCTAATTTTACCTTGGTGCAGTTAGACAGGCTCGCCGGCATGGC
ACTAACTCCTGCTGACTGGCAAACGATTGTAAAAGCCGCTCTCCCTAAGA
TGTGCAAAAATTGGGAATGGAGAGCGCTTTGGCTTGGAACTGCACCAAAC
GCAGGCCCGAAAAAAAGCAACTGGTTTTTACCCCCAAAAAAAAAAAAAGG
GATCTTTTTATTTTTTAACAGGGCCGGGGAGCTTATATTTGCGTGATCTA
AAAAAAACACTTGGGGGGACCTATTTCCCAAATTTTTTCTCCCCCGTTTA
AGCAGCTGCAGGAGGTCTTTCCCTTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_f21.b1 MSMg01no462_f21.b1 CHROMAT_FILE:
MSMg01no462_f21.b1 PHD_FILE: MSMg01no462_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:21 2005
         (405 letters)



>mm_chrX_13842343_13843148
          Length = 806

 Score =  745 bits (385), Expect = 0.0
 Identities = 398/403 (98%), Gaps = 3/403 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgaccattc--cattttgggctcccttcactctatgtgttcttaagccaataa 62
           |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgaccat-caacattttgggctcccttcactctatgtgttcttaagccaataa 263

                                                                       
Query: 63  ttcattctttgttttcccggatgtgagagataaaggtgaagagcattgctgcattcctaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttcattctttgttttcccggatgtgagagataaaggtgaagagcattgctgcattcctaa 323

                                                                       
Query: 123 acactttagagtgaaatcaagttggttctggtatctaggcaacaagatttcagataggag 182
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 acactttagagtgaaatcaagttggttctggtatctaggcaacgagatttcagataggag 383

                                                                       
Query: 183 tggtaatgaggaatgggtgtggacccacctggctccctgtcatttggtatgtgtgatagg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggtaatgaggaatgggtgtggacccacctggctccctgtcatttggtatgtgtgatagg 443

                                                                       
Query: 243 aaaatctgatgaggtatgaaatggtgctttgttctcatgatatttttacctcttggattc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaaatctgatgaggtatgaaatggtgctttgttctcatgatatttttacctcttggattc 503

                                                                       
Query: 303 caaggaagtttgctaagagttcatttctcctgtcttgggggagttgaagtcctagggtta 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caaggaagtttgctaagagttcatttctcctgtcttgggggagttgaagtcctagggtta 563

                                                      
Query: 363 agtaccccacagtgctcagctttctttcattctcttatgtcaa 405
           |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 564 agtaccccacagtgctcagctttctttcattctcttgtgtcaa 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 806
Length adjustment: 9
Effective length of query: 396
Effective length of database: 797
Effective search space:   315612
Effective search space used:   315612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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