BAC Information

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BAC

Clone NameMSMg01-464E02
ChromosomeX (Build37)
Map Location 150,382,393 - 150,382,605
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp51, LOC635253, Mageh1, EG385454, EG436240, Rragb, Klf8, LOC100039932, EG635136, Ubqln2, Cypt3, LOC100039998, LOC667241, Kctd12b, 2210013O21Rik, Smt3h1-ps, Spin2
Downstream gene4921511M17Rik, OTTMUSG00000019268, LOC625650, LOC100040020, EG546397, OTTMUSG00000019256, EG434874, LOC635580, EG625767, LOC270665, LOC100040076, 4930524N10Rik, EG434879, LOC667313, 4930542N07Rik, EG434881, LOC100040899, LOC667331, LOC100040925, LOC100040937, Magea6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464E02.T7 (MSMg01no464_e02.b1)MSMg01-464E02.TJ (MSMg01no464_e02.g1)
ACCAG548714AG548715
length740807
length of high quality
(start - end)
566 (49 - 614)213 (80 - 292)
definitionCHROMAT_FILE: MSMg01no464_e02.b1 PHD_FILE: MSMg01no464_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:57 2005CHROMAT_FILE: MSMg01no464_e02.g1 PHD_FILE: MSMg01no464_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGAGTGGAGGGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGGACACTTCGAGAAGACCAAAAATGTGGATAATAGGAGTAG
ATGAAAAGGATGATTTTCAACATAAAGGGCCAGCCAATATCTTCAACAAA
ATTATAGAAGAAAACTTCCCAAACCTAAAGAATGACATGCCCATGAGTAT
ACAAGAAGCCTACAGAACTCTGAATAGTTTGGACCAGAAAAGAAATTCCT
CTCGACACATAAAAATCAAAATAACAAACGCACTAAATTAAGATAGAATA
TTAAAAGCAATAAAGGAAAAAGGTCAAGTAACATATAAAGGCACACCTAT
TAGAATTACACCAGACTTCTCACCAGAGACTATGAAAGCCAGAAGATCCT
GGACAGATGTTATACAGACCCTAAGAGAACACAAATGCCAAACCAGATTA
CTATACCCAACAAAACTCTCAATTACCACAGATGGAGAAAACAAAGTATT
CCATGACAAAACCAAATTCACAAAATATCTTTCCACGAATCCAGCCCTTT
AAAGGATAATAAAAGGAAAACACCAACACAAGGGTAGAAATTATACCCTA
GAACAAGCAAGAAAATAATCCTTTCAAAAACCTAACAGGAGACAGCTGCA
AGAACAGACTCCCAGCTTCAACAACAAAAATACAAGGAAGGAACAATTAC
TTTTCTTTAATTTTTAACATCAGGGACCTCATTTACCCGT
NAACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTTCTCAAGTGGACATAG
AGGTGCCATGGACACATATGTGCAGAAGTATAGGGGAGCACTGGGGATGA
GTGTGTCTGTCTGCAGAGGCAATGAACCACTGGGCATGAGAGTGAAGGTG
ACTGTAGGTTATGGAAGAGGGCAATTGGCCTGTGAATGCAGGTGCTTGCA
GAAGCCAGGGGTTGGCACTAGGAATGTGGGTGTAAGTGACTGCTAAGGCC
AGAGAGTGGTAGTTGGCATGGAATTTTTTTTACCTTTAGATACCAGAGAG
GGGCAGTGGCCTGTGATGTAAGGCCAAGTACATGCAGAGACCAGGGCGTC
AGTTAACATGTGCGTGTTGTTGCTGCCTGATATCACAACTCTATTCCTCC
CCTGTTATCCTCTCTCTCTTCCCCTCCCCTGTTTTTATCATTCTCCCCCT
GTACTTTTCCCCTTTCGTTCTTCTTCTCTTCTTTCCCTTCCTCCTTTTTC
TCCCCCTTCTTCTTCTTTCTTCTTTTTCCATTCCTCTTTCGTCTTTTCCC
TTTCATCTCCTCTCCCTTTCGATCTTTCTTCCTCCCGTCTCCTTGTCTTG
TTTCCTTACATTCTTCTTTCCTTTTTCCCCCTTTCTTTTTCCTTTCTCCC
GTCTCTCTTTCTTCTCGTTTCGCCTCTATCGTCTGTTTCGTTCTTCCCTC
ATTTTTTCCTCCCCTCCCCCCCTTTAACTCTCCCGCTCTTTACTTCCTTT
TTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_e02.g1 MSMg01no464_e02.g1 CHROMAT_FILE:
MSMg01no464_e02.g1 PHD_FILE: MSMg01no464_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:57 2005
         (213 letters)



>mm_chrX_150382193_150382805
          Length = 613

 Score =  404 bits (209), Expect = e-117
 Identities = 212/213 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttttctcaagtggacatagaggtgccatggacacatatgtgcagaagtataggggagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttttctcaagtggacatagaggtgccatggacacatatgtgcagaagtataggggagc 260

                                                                       
Query: 61  actggggatgagtgtgtctgtctgcagaggcaatgaaccactgggcatgagagtgaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actggggatgagtgtgtctgtctgcagaggcaatgaaccactgggcatgagagtgaaggt 320

                                                                       
Query: 121 gactgtaggttatggaagagggcaattggcctgtgaatgcaggtgcttgcagaagccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactgtaggttatggaagagggcaattggcctgtgaatgcaggtgcttgcagaagccagg 380

                                            
Query: 181 ggttggcactaggaatgtgggtgtaagtgactg 213
            ||||||||||||||||||||||||||||||||
Sbjct: 381 agttggcactaggaatgtgggtgtaagtgactg 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)