BAC Information

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BAC

Clone NameMSMg01-466D23
ChromosomeX (Build37)
Map Location 35,871,713 - 35,872,107
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495
Downstream geneCul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171, LOC670539, LOC100039700, 1700085A12Rik, LOC100039715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466D23.T7 (MSMg01no466_d23.b1)MSMg01-466D23.TJ (MSMg01no466_d23.g1)
ACCAG550238AG550239
length781784
length of high quality
(start - end)
247 (74 - 320)416 (83 - 498)
definitionCHROMAT_FILE: MSMg01no466_d23.b1 PHD_FILE: MSMg01no466_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:39 2005CHROMAT_FILE: MSMg01no466_d23.g1 PHD_FILE: MSMg01no466_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTACTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXACGAGAACCC
GCGGAATTCATGTTTTTAACATGAATCTCTTGTCTCTCGACTGTTGATTC
TTGAAAAGTAACTATAATTATCATATTCTCTTTTATTAAGATGTATTTTA
TTTTGCATGTGCACTCGGGCAAAGCGAGTGTGGGTGTCCATGGAGCCCAG
AAGAGGGCATTGCTTTCCCAGGAGCTGGGGTTACAGACACTTGTGAGCAA
CCTGTCATAGATGTTGGGAACAGAACTCGGGTTCTCAGCAAGGGCAGCAC
ATGTTCTTACTGCTGGGTCATTCTTCTAACCTCCAGGAAGAGAGGACCAG
TGAATAGATCCTGCATTTAGTTTTGAGGCGTCCATAGGCCTAAGATTTCT
CATATTCAATGCCAGGGATAACACAAAGCAATGGGGTAGAGAAAGTATAA
GACACACAGAGAGACATCTGTCCAGTGCTGATCATTCCCTGAACTATATC
CTAATTTCATTGAAATTCATAGAGAAGAATGGATTTCTCTTTCCTGGAAG
TGGGTCCCTTTCTCCTATAAAAATGGGGCAGCAGCATCTTGGAAAAGGAT
TCGTTTAAGGGAAGATCCCTGGACCTAAATATAATGGAAGGCTTTTAAAA
CATGTTTTGTTTCCCTATCCGTTAAATAATTCTCATTCGGTGGGTATATT
TTTGTCGGAGTTGGGTTTCGTCCTTTTTTGTCCCTGGTTCATCTCCCTTA
TAACACTCTTATTTTCTTCCTCATTTCCCTG
TTTTCTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAGCAGAGTATCACTT
CCCTCACACTTGAAGTGAACTAAGAGGGTTGATTCTTTTGGATTGATAAA
TGTAATTCCTATAAGCTAAGCATGATGATAAACTTAACTCCTGAAACCCC
AGCACTTAGGACATAGAGGCAGAAGGACCAGGATTTTAATGGTATGCTTG
GCTACATAGCAACTCAAGGCCATCCTGGGCTACATAAGACTTTGTCTCAA
AAATTAATTCCAACATAGCTTAATTAATTTTTTAGGCTAGACGGCCTGCA
CTCTCCCATTACTGCTTGCTGAAAAACCTGTTTACCATTCCAAGGCTGGA
AGAAAGTATTTAAGAAGGAGAAAATCCTTTAATGGGGGGCAGGGGTGCCT
GGACTCAGAACACTCAAAGTGGAGGAGAGAGAAGCCCTGGCCCATCAAAT
AGCTCCCTCCTGTTTTCCAAGGGATGCTTCCAAAAAATTCTGTGAAGGTC
TCCTGCCCATGCCAAAAGAACTGGTACCAGGCATGCATGTGAAGCATACC
TTTTACCTGCAAAGGGAATCTTCTTGAATCTTTCCTAAAGGAGTTGAAAC
TTACTTGTTTCCCCAAATGTTGTATTTGTTGCTTCAAAAATAATCCCCAT
TTTTTTAACTATCCCGTCTCTTTATTTAACAACCTCACTCTTGTTTTGGG
GTGGCACCTACTTTTAATAAACTATTTCGGACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_d23.g1 MSMg01no466_d23.g1 CHROMAT_FILE:
MSMg01no466_d23.g1 PHD_FILE: MSMg01no466_d23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:40 2005
         (416 letters)



>mm_chrX_35871292_35872107
          Length = 816

 Score =  706 bits (365), Expect = 0.0
 Identities = 387/401 (96%), Gaps = 12/401 (2%)
 Strand = Plus / Minus

                                                                       
Query: 22  tcacacttgaagtgaactaagagggttgattcttttggattgataaatgtaattcctata 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tcacacttgaagtgaactaagagggttgattcttttggattgataaatgtaattcctata 757

                                                                       
Query: 82  agctaagcatgatgataaacttaactcctgaaaccccagcacttaggacatagaggcaga 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 agctaagcatgatgataaacttaactcctgaaaccccagcacttaggacatagaggcaga 697

                                                                       
Query: 142 aggaccaggattttaatggtatgcttggctacatagcaactcaaggccatcctgggctac 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aggaccaggattttaatggtatgcttggctacatagcaactcaaggccatcctgggctac 637

                                                                       
Query: 202 ataagactttgtctcaaaaattaattccaacatagcttaattaa------ttttttaggc 255
           || |||||||||||||||||||||||||||||||||||||||||            ||||
Sbjct: 636 atgagactttgtctcaaaaattaattccaacatagcttaattaagagcag------aggc 583

                                                                       
Query: 256 tagacggcctgcactctcccattactgcttgctgaaaaacctgtttaccattccaaggct 315
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tggacggcctgcactctcccattactgcttgctgaaaaacctgtttaccattccaaggct 523

                                                                       
Query: 316 ggaagaaagtatttaagaaggagaaaatcctttaatggggggcaggggtgcctggactca 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ggaagaaagtatttaagaaggagaaaatcctttaatggggggcaggggtgcctggactca 463

                                                    
Query: 376 gaacactcaaagtggaggagagagaagccctggcccatcaa 416
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gaacactcaaagtggaggagagagaagccctggcccatcaa 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)