BAC Information

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BAC

Clone NameMSMg01-466G08
ChromosomeX (Build37)
Map Location 17,587,353 - 17,587,588
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043063, Efhc2, Fundc1, EG278181, EG668994, EG436196, EG331391
Downstream geneDusp21, LOC100043951, Utx, LOC100043952, 4930578C19Rik, LOC100043098, EG628855, LOC385333
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466G08.T7 (MSMg01no466_g08.b1)MSMg01-466G08.TJ (MSMg01no466_g08.g1)
ACCAG550352AG550353
length766765
length of high quality
(start - end)
390 (52 - 441)235 (79 - 313)
definitionCHROMAT_FILE: MSMg01no466_g08.b1 PHD_FILE: MSMg01no466_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:52 2005CHROMAT_FILE: MSMg01no466_g08.g1 PHD_FILE: MSMg01no466_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTGATTTTCCCAAGACTTTTATCATCAATGGGTGTTGGA
TTTTGTTAAATGCTTTCTCAGCATCTAATGAGATCATCATGTGGTTTTTG
TCTTTGAGTTTGTTTATATAGTGGATTACGTTGATGGACTTCCATATATT
AAACCATCCCTGCATCTCTGGAATGAAGCCTACTTGTTCATGATGGATGA
CTGATGTGTTATTGGATAGTTTAGCGAGAATTTTATTGAGTAGTTTTGCA
TTGATATTCATAAGGGAAATTGTTCTGAAGTTCTCTGTCTTTGTTGGGTC
TTTATCTGGTTTAGGTATCAGAGTAATTGTGGATTTGCAGAATTAATTGG
ATAGGGTACCTTCTGTTTCTATTTTAGGGAATAGTTTGAGAAGAAAATCA
ATTTATTTAATAAGTCTTATTAATAACTTAATTAAGTCAATTATCTCAAT
AAACACAGAAACCTCTTTTGATTGTTACACCCTTTTCATTATTTCTAAAT
ATTTGTTATACTATAAATAACAGATTATTTTCTCTCTTTAAATATAACGT
GTCCTATTTAATCCCTGTGACTGATATCTCCCCTATTTCGCCATTTATAT
TTCTTCTTCTCTACATACCTCTTCCACGCTCTTCTTTTTCTTTCCTCCCC
TCCAGATTTTTCCCACATTTTATACACTTTATATCGTGACTCCCCCTTCC
TCTTTTTACTTATTTG
TTTTCACGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTACCCATCTTTCTTTTAG
GCTGATATTACTTTATTTTTGATATATTAAGCTTTTTAAATGTACTATAT
GAATTACAGTTGTTTATTTTTTCAGTTTGCCATTTGTCTTTTAACTTCAC
TATGATGATATTTGCCATGCAAAAATACTGAATATGTAGTAATTGATATT
AATAATTTCCTTTATGGCCTTTAGGTTTGGACTTAGGCTATGCTGTAATT
ATAAAAAAGTACCTGTATTCTTCCATCTATTAGGTTATGGCTTCATTTGT
GTCATGTATATCTAGGATCTATTTTTAATAATTGAGGGTTACGAAACTAT
CACATACTCACCAATAGTCCCTATGAAAGAACCCCGAAGAGGGGAGACCC
TCACTCAAGACTCGTGATGACACATCCCCCCAAGAATTCATGAGAGATCA
TCCTTGCTGCAATCACATGAGGTTTATTGATATGAACCAGCACGCTGGGG
CCGACTTGTATCCCATGCAGGCTAATATGATTTTAAACCCCCCATTACCT
GCTACCACGTTTTTATCTCACTAAGAAACTCCCTTTTCCTTTTTTCTACC
GTTGGTACATCAAATGTCTCATACTTATTCTCCTCACTCCCGTAATAAAT
CTCCCTCCCTTCAATTCTCTTCCCTCCTCCTCCCTCCTTACATCTCCTCC
TACATATTTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_g08.g1 MSMg01no466_g08.g1 CHROMAT_FILE:
MSMg01no466_g08.g1 PHD_FILE: MSMg01no466_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:52 2005
         (235 letters)



>mm_chrX_17587153_17587788
          Length = 636

 Score =  441 bits (228), Expect = e-128
 Identities = 234/236 (99%), Gaps = 1/236 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctacccatctttcttttaggctgatattactttatttttgatatattaagcttttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tttctacccatctttcttttaggctgatattactttatttttgatatattaagcttttta 377

                                                                       
Query: 61  aatgtactatatgaattacagttgtttattttttcagtttgccatttgtcttttaacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aatgtactatatgaattacagttgtttattttttcagtttgccatttgtcttttaacttc 317

                                                                       
Query: 121 actatgatgatatttgccatgcaaaaatactgaatatgtagtaattgatattaataattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 316 actatgatgatatttgccatgcaaaaatactgaatatgtagtaattgatattaatcattt 257

                                                                   
Query: 181 cctttatggcctttaggtttggacttaggctatgctgtaattat-aaaaaagtacc 235
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 256 cctttatggcctttaggtttggacttaggctatgctgtaattataaaaaaagtacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 636
Length adjustment: 9
Effective length of query: 226
Effective length of database: 627
Effective search space:   141702
Effective search space used:   141702
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)