BAC Information

Click to search

BAC

Clone NameMSMg01-466I05
ChromosomeX (Build37)
Map Location 53,203,008 - 53,203,123
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038960, EG666151, EG666161, EG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146
Downstream geneLOC100039160, EG630825, LOC100039187, LOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466I05.T7 (MSMg01no466_i05.b1)MSMg01-466I05.TJ (MSMg01no466_i05.g1)
ACCAG550442AG550443
length806803
length of high quality
(start - end)
116 (124 - 239)362 (81 - 442)
definitionCHROMAT_FILE: MSMg01no466_i05.b1 PHD_FILE: MSMg01no466_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:01 2005CHROMAT_FILE: MSMg01no466_i05.g1 PHD_FILE: MSMg01no466_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:01 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATTTTCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGAATCC
GCGGAATTCCTACTTACGTCTTTGGAGACACAGGGATTTTATTGGGTTCT
CATGGAGAATGGGAGAGTGTCCGTGCTCCATTAAAAAGGTACTCACATTC
ACTATTTTGATGCCTTTCTTTCTATTTGAGTGTGCTTTGTACTTTTGTCT
GCTATGTGTTGTGTTCTGTGTTCTTTGTTACTAACTCTAGGGCTCATACC
ATACTTGGAAAATGAAAGTCAGCTTGAAAACCTTTCATATTTGGTCTCTG
TATACAAACTCTTACTCATTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCG
CGCTCTTTCTCCCCCCCTCTCTCACTCTCTCTTTGACGTCTTTCATACAG
TGCTGTCTCTGTTGTTTACCCCCTTTTTTTAGGAAATTCTTTCTCCCATA
TCCACTTTTTCACCCTCTTTTTATATTTTACTCTTTCCTTCTCTTTTTTT
TTATCCCCTCTTATTCTCCCCTTTCCCTTTCTTTTTTCCCCCTTATTCTC
ACTTTTTACCATTATTCCTCCTTTTCTTACTCCTTCTACTTTTTATCTCT
CTTCATTTGTTCTCCTTTTCCCACCTCTTTTTTCTTTTTTTCCTTTCTTC
TTTTTTTATTCTTCTTTTCATCTCTCTTTATTTTTTCTCCTTTTCTTATT
TTACTCTTTTCCCCCCCTCTCTATTGTTCTGCCTACGTATATTTACCCTC
ACCCTTTCTTTATCCCCTCCCTCCCTCCTATTTTTTCTTTCTCTCTCTAT
TTTTTC
NCCCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTCTACCTGGTTTTGATT
CCCATATCCTGAGATTAAAGTCCTTTCTAAGCAGATCTCAACACCTTTTT
TTAAAACTTTCTGTCTCACAGTTCTTGAAGAATAGATGGGGGAGCAGAGA
AAATTTCACCCCAAAAAATTGACAATTAGTGGCTGCAGGTGTGAGGGCCA
GTTTTCTTCATAGATTTGGCTCCTCAGAGGCTGCCCATGTTCCAGTGGAT
GTGTTACCCTAACCCCACATATGTAGTCAGCACTAAATTCACTCAGTGGT
CTTTATTAAAATGTGCATGGAATTAAAGCTAAAAGTGATACAGGAGAAAT
GGAGAGCAATTCTAGGAGGAGAAGATGGGGATGGATTTACTCAAACTCAT
TATGATTATGTACGAAGGTCTTCAGCAAAACATCTAAGACTAAGTATTTA
CGGACCATTCGTTATATTTTATATTATCACCCTCGCCTCCCTAGGATAGC
ATCATACAGCTCACCGCGGGGCTGGCGCGCTCATATATTTTTTTTGTTTA
TTTTCCGTCGTCCTTAGTCTTTGGAAATTTGCCTGTCCGCGAAGATATCG
CATACCCCCACCGCATTACATCGGTGCGACCGATCCGTGAATCCTATTGT
GATTGTTTTCGTCCCCTCCTGACCCCCTTACGCCCTGATGCCTCTTCCAC
TCATTTCTGCGTCCCTTAGTTATTTCCGCCTCTCGAACTCTATAAATAAG
TTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_i05.b1 MSMg01no466_i05.b1 CHROMAT_FILE:
MSMg01no466_i05.b1 PHD_FILE: MSMg01no466_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:01 2005
         (116 letters)



>mm_chrX_53202808_53203323
          Length = 516

 Score =  124 bits (64), Expect = 2e-33
 Identities = 103/116 (88%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctccattaaaaaggtactcacattcactattttgatgcctttctttctatttgagtgt 60
           |||||||||||||| || || |||||||| | ||||||||||  |  | |||||||||||
Sbjct: 316 tgctccattaaaaaagtccttacattcacaaatttgatgcctgcccgtgtatttgagtgt 257

                                                                   
Query: 61  gctttgtacttttgtctgctatgtgttgtgttctgtgttctttgttactaactcta 116
           ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 256 gctttgtacctttgtctgctgtgttttgtgttctgtgttctttgttactaactcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 516
Length adjustment: 8
Effective length of query: 108
Effective length of database: 508
Effective search space:    54864
Effective search space used:    54864
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)