BAC Information

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BAC

Clone NameMSMg01-467F09
ChromosomeX (Build37)
Map Location 155,081,067 - 155,081,315
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667460, LOC667465, Smpx, Klhl34, Cnksr2, EG667483, LOC671033, LOC667487
Downstream geneLOC436243, LOC100040371, Rps6ka3, Eif1ay, Mtap7d2, A830080D01Rik, LOC100041359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467F09.T7 (MSMg01no467_f09.b1)MSMg01-467F09.TJ (MSMg01no467_f09.g1)
ACCAG551070AG551071
length739843
length of high quality
(start - end)
249 (68 - 316)93 (74 - 166)
definitionCHROMAT_FILE: MSMg01no467_f09.b1 PHD_FILE: MSMg01no467_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:10 2005CHROMAT_FILE: MSMg01no467_f09.g1 PHD_FILE: MSMg01no467_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGA
ATTCAGCAACATTGCTCATCTCTTTCCTCAAAATAACCCAGAAAAAAGCA
CAAGTTATTTAGAGGTAAAGTACCTAATTCTGAATGCAATATTTATGCAC
TAATTTGAATTTCACATGAGGGAACATGCAAGCATTTTGCTTACCCTTGA
AAAACAAAATGTGTAGCATGTGCATACATATTATTAAAGAGCAAGGGACA
TGCATGGACTGAGGGACATATGTGATAGGTTCTTATTCTCTGTGTGCTCA
GCAGACCCTGAAAACTTGTTTTAGTATTGTGGATTAGACTGCACCATAAA
GAATATTTCCTCTAATTTCTTGTTTACCTCAAAAATAAAACAAAGAAACA
AACAAACAAATGATAAAAATAGAATACAAAAGTGGGTAGGCACAGAGGTG
AGGAGGAACTGGGAGGAGTTGGGGAAGGAAGAGTGTGACCAACATATATT
AATTTTTTAAAGAGACACTGCTACACTAGGTGCGGAAATACCTGTCTGTA
ATCCCACCACTGAATTCTAACCTGCCATACCTAAATAGTGAGTTTCAGCC
ATTCCTGGACTACTTACTGATACTGTCTTAAATCATACCCTTCTTATTTC
CTTCAAGCAATATATTACTACCCCAATATCTTATCCTTCTTTTTCCCCCT
TTCATACCAATTTTTTTTTTCTGTACTCACTTTTCCTAT
AATACAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAAAATTCTTATTTTCTTATGTCTTATGTGTAATA
ACAGGGTTACTAAATTCTGTCATCTTTGTCCTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGACGCCAACCCTCACCCCTCTCTCCCCCCCCT
ACTCCTGACTTTTTACATACCCCAAAACAAAAACAACATTACTAATATTT
TTAAAACCCAAACCCTCCAACCAAAAATTAAACCTATCCCTTCACTCATC
ACAAACCACACATTCACATACATTAAACCAAACAATCAACCCAACCATAT
CACAAATAATTTTCTCCCCCCCACCAACAAAACAAACAAAACCAAACTCA
CTACAATACCCAAAACAACCCAAAAATAAACCACACACAACAAACCATAA
CCCAAATAAAACAAAAAACAAACACATACAACACATACCACAAACACAAC
AAATACCACATCACCCCAAAATACCCAACACCCCCAATTACACAAAATCC
ACACCACACCAAACCCAATTACCACCAACACCCACAACACACCCCAATCA
AACCCACATTACCCCCATACACCCCAACCAAACCAAATACTCACCCACAA
AAACCCCCAAATTCACTCCACACAACTACCATTAACTATACTTACTCACA
AACCAAACCACAATCCTCCCAACTTACAAAAACCCCAACCCCTCACTACA
CCACAAAACAATAAACCACCCACAACTCCACCACACAACATATCACAAAC
CACACCCCCACTAACCCCAAACATCAATCACACCTACAACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_f09.b1 MSMg01no467_f09.b1 CHROMAT_FILE:
MSMg01no467_f09.b1 PHD_FILE: MSMg01no467_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:10 2005
         (249 letters)



>mm_chrX_155080867_155081515
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctctttcctcaaaataacccagaaaaaagcacaagttatttagaggtaaagtacctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctctttcctcaaaataacccagaaaaaagcacaagttatttagaggtaaagtacctaa 260

                                                                       
Query: 61  ttctgaatgcaatatttatgcactaatttgaatttcacatgagggaacatgcaagcattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctgaatgcaatatttatgcactaatttgaatttcacatgagggaacatgcaagcattt 320

                                                                       
Query: 121 tgcttacccttgaaaaacaaaatgtgtagcatgtgcatacatattattaaagagcaaggg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tgcttacccttgaaaaacaaaatgtgtagcatgtgcatacatattattaaagggcaaggg 380

                                                                       
Query: 181 acatgcatggactgagggacatatgtgataggttcttattctctgtgtgctcagcagacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatgcatggactgagggacatatgtgataggttcttattctctgtgtgctcagcagacc 440

                    
Query: 241 ctgaaaact 249
           |||||||||
Sbjct: 441 ctgaaaact 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)