XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
AAGCTTTCGCTCAGCTCAAGGACTTTCTAGGATATTGGAACACTGGCAAA
AGCTTAGCTATATCAGAATTCAATCTTAAAAAGAACTTATAATAAGATAA
CACTAAAAGAGAGCATGTGGATCCATACACCAGACTAACGCGGGAATAGG
GGATGAGTATATGGGTTAATGAGAAGGCCAAAACTCCAGAAGGTGAGCTT
CCGTGAAACTCTTTGCCTCATGAGTGCTTCCAGGCCTCTCGGCCTGTCAA
GCTGACTCGACTGTTGTGCGTGGCAGCAGTACCCATCCATGGTCTCTGTA
TTAGCTCCTGCCTCTAGGTACCTGGCCCATTTCAGTTCCTGTTCTGTCTG
TCTTCAGATGATGAATAGCAATGAAGAAGTGTATACCAAATAAGTCCTAC
CCTCCCCAACTTGTGCTTGGGTTATAGTATTTGGTGACAGCTATACCAAG
ATTAACACATTCTACATTACCTATGCGATGGCCTGTCTACAATCTGTAGA
TCCAGTGTAAGTACTCTCCATACCATTCACTCGTGCTGCATCCCTTGTTG
CCCATTCTACTGTTCTATTTTCCTATGCCTCCTTTTTCTCTTTTCTCCTT
TGTTTCTACTTCGTCTTTCATTTTTTTTGTCATCTTTTTAGTCTGCATTC
TGCTTTTTCGCTCGCCCTTCTTTTTTTTCTTCCCACTCACTCCCTCTTCT
CCTT

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTACTCAAAGTCATTGGAGACAACAGCAAATCT
GTTTTGTCCGAATGGAGAATGGATGAGGATTTGTGCTCCATTAAAAAGGT
CAATAAATTGACTAATTTGATTCCTGCCTGTATATTTGTGTGTGCTTTGT
ACTTTTTTCTGCTTTGTGTTGTGCTCTGTGTTCTTGATTATTACCTCTAG
GGTCCTTACCATACTTGCAAAATGAAACATTTCTCAGTTGGAAAAGCTCT
CATTTTTTTTCTCTGTATACAATATGATTCTTTAAAAAATAAGTTTTTGA
TTCCTTTGTACTAATAGTAAGATCAAAATTTCTGGGAAGACACTTTTCAT
TGAAAATACAGTTTTTCATTCAATAGATTCAGATTACTGTCCCCCCAAAT
CCTTCTACAACCTCTCCACTTCTCGACCCACCCAAATTCACACTTTTTCT
TTCTCCCTTTATTAAAATACAAACAGGCATCTAAATAATAATGATACTAT
TAATGATACTAATGACAATAATAATGAAGATTAAGATACNAAATAAACAA
ATGAACCAGAACAGAACAAAGCAAACATAATGAAAAAGAGGCCAAGAAAA
AGCACAAGAAATATACATGTAGACACAGAGACATATATGTTTCCCAACAC
TCAGAAATCCCATAAAAACAAAAAAACTGCCTACCATAN

Query= MSMg01no467_n15.g1 MSMg01no467_n15.g1 CHROMAT_FILE:
MSMg01no467_n15.g1 PHD_FILE: MSMg01no467_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:51 2005
         (533 letters)



>mm_chrX_53358124_53359053
          Length = 930

 Score =  366 bits (189), Expect = e-105
 Identities = 418/501 (83%), Gaps = 21/501 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctactcaaagtcattggagacaacagcaaatctgttttgtccgaatggagaatggatgag 60
           |||| ||||||| |||||||||||||  | || | ||||| | ||||||||||||  |||
Sbjct: 494 ctacccaaagtctttggagacaacagggattccg-tttgttctaatggagaatgggggag 436

                                                                       
Query: 61  gatttgtgctccattaaaaaggtcaataaattgactaatttgattcctgcctgtatattt 120
            ||| |||||||||||||||||||  || ||| |||| |||||| |||| |||| |||||
Sbjct: 435 tattagtgctccattaaaaaggtccttacattcactagtttgatgcctgtctgtctattt 376

                                                                       
Query: 121 gtgtgtgctttgtacttttttctgctttgtgttgtgctctgtgttcttgattattacctc 180
           | ||||||| ||||||||| |||||| ||||||||| |||||||| |||  || || |||
Sbjct: 375 gagtgtgctatgtacttttgtctgctgtgtgttgtgttctgtgttattggctactaactc 316

                                                                       
Query: 181 tagggtccttaccatacttgcaaaatgaaacatttctcagttggaaaagctctcattttt 240
           || |||||||||||||||||||||||||||     ||||||| ||||| || |||| || 
Sbjct: 315 tacggtccttaccatacttgcaaaatgaaa-----ctcagtttgaaaatctttcatattc 261

                                                                       
Query: 241 tttctctgtatacaatatgattcttt-aaaaaata--agtttttgattcctttgtactaa 297
            | ||||||||||||||||||||||| ||||||||  ||||| |||  |||||||||   
Sbjct: 260 gtcctctgtatacaatatgattctttaaaaaaatatcagtttatgagacctttgtac--- 204

                                                                       
Query: 298 tagtaagatcaaaatttctgggaagacacttttcattgaaaatacagt-ttttcattcaa 356
              ||| ||| | |||| | |||||| |||||| |||||||||||| | |||||||||| 
Sbjct: 203 ---taacatctacattt-ttggaagatacttttaattgaaaataca-tcttttcattcag 149

                                                                       
Query: 357 tagattcagattactgtccccccaaatccttctacaacctctccacttctcgacccaccc 416
           || |||| |||||| |||||||||| |||||||| | |||||||||||||| ||||||||
Sbjct: 148 tacattctgattacagtccccccaactccttctatatcctctccacttctctacccaccc 89

                                                                       
Query: 417 aaattcacactttttctttctccctttattaaaatacaaacaggcatctaaataataatg 476
           |||||||||| |||||||| |  |||||||| |||||||||||| ||||||||||| |||
Sbjct: 88  aaattcacac-ttttctttttttctttattagaatacaaacaggtatctaaataatgatg 30

                                
Query: 477 atac-tattaatgatactaat 496
           ||||  ||| |||||||||||
Sbjct: 29  atacaaatt-atgatactaat 10


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 930
Length adjustment: 10
Effective length of query: 523
Effective length of database: 920
Effective search space:   481160
Effective search space used:   481160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)