Query= MSMg01no469_k22.b1 MSMg01no469_k22.b1 CHROMAT_FILE:
MSMg01no469_k22.b1 PHD_FILE: MSMg01no469_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:20 2005
(492 letters)
>mm_chrX_149000487_149001378
Length = 892
Score = 870 bits (450), Expect = 0.0
Identities = 482/496 (97%), Gaps = 13/496 (2%)
Strand = Plus / Minus
Query: 4 ggaattccttatgc--atttccatacatttttaattggttgcacatattaacattataag 61
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ggaattccttatgcaaattt--atacatttttaattggttgcacatattaacattataag 527
Query: 62 attcttttctaagaaacattacataataaatggatgctgttaaaaacgttctgattagtt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 attcttttctaagaaacattacataataaatggatgctgttaaaaacgttctgattagtt 467
Query: 122 aaaattagcaattattaacagatacatacaaaatagcctgttcagaatggagcgtgggca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aaaattagcaattattaacagatacatacaaaatagcctgttcagaatggagcgtgggca 407
Query: 182 ccagtcttcccacaggatcttcaaggaggggtaggggtaaataaaacacaagactcttca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ccagtcttcccacaggatcttcaaggaggggtaggggtaaataaaacacaagactcttca 347
Query: 242 aaaatcagataagtagatacatatgaactgtaaactgtttcttcagtctccagtggacaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aaaatcagataagtagatacatatgaactgtaaactgtttcttcagtctccagtggacaa 287
Query: 302 aacagtaatgtttccatgcccactgcacctcagagtgcccagggtctccatcatatgcca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aacagtaatgtttccatgcccactgcacctcagagtgcccagggtctccatcatatgcca 227
Query: 362 taaagaggattcatggtgagcagctctctctctctctctctctctctctctctctctctc 421
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 226 taaagaggattcatggtgagcagctcgctctctctctctctctctctctctctctctctc 167
Query: 422 tctct-ctctct-ctctctctctctctc---tctcctctctctcctctctctctcctctc 476
||||| |||||| ||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct: 166 tctctcctctctcctctctctc-ctctcctttct-ctctctctcctctctctctcctctc 109
Query: 477 tctttcctttctctct 492
|| ||||||||||||
Sbjct: 108 tc--tcctttctctct 95
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 224
Number of extensions: 60
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_k22.g1 MSMg01no469_k22.g1 CHROMAT_FILE:
MSMg01no469_k22.g1 PHD_FILE: MSMg01no469_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:20 2005
(457 letters)
>mm_chrX_148864694_148865550
Length = 857
Score = 830 bits (429), Expect = 0.0
Identities = 447/453 (98%)
Strand = Plus / Plus
Query: 5 tgtagaacaggctacctcatactcacagagagctgacaggctctgcctccaaagttctgg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgtagaacaggctacctcatactcacagagagctgacaggctctgcctccaaagttctgg 264
Query: 65 ggttaaaagcagtgtgccattaccacccagctaaaaaacaatttgaaggagacttcctgg 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 265 ggttaaaagcagtgtgccattaccacccagctaaaaaacaatttgaaggagacttcctag 324
Query: 125 atctaatctcagagagatgttattattaggctttgacaatgttaatggagcatgtttcaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atctaatctcagagagatgttattattaggctttgacaatgttaatggagcatgtttcaa 384
Query: 185 gattaagaccacattagtgcaataaaaaacaacggggtcctgtccttctgagcttgctat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gattaagaccacattagtgcaataaaaaacaacggggtcctgtccttctgagcttgctat 444
Query: 245 tcctactatgactccaaatgattgacagttgataactgtagatctaaaacttgttttgtc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcctactatgactccaaatgattgacagttgataactgtagatctaaaacttgttttgtc 504
Query: 305 catcatccccttgacatcacaagactgtgaaagacttgcctttgccatgccaagatttac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 catcatccccttgacatcacaagactgtgaaagacttgcctttgccatgccaaaatttac 564
Query: 365 tatgagttccccgccaaaatatatcaatgaaaaggcatgttaaacagcaccattatatgc 424
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 565 tataagttccccgccaaaatatatcaatgaaaaggcatgttaaacagcaccgttatatgt 624
Query: 425 caggcatgtgtgggctctgctttggctcttgtc 457
||||||| |||||||||||||||||||||||||
Sbjct: 625 caggcatatgtgggctctgctttggctcttgtc 657
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space: 378609
Effective search space used: 378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
