BAC Information

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BAC

Clone NameMSMg01-469N13
ChromosomeX (Build37)
Map Location 137,301,772 - 137,302,010
singlet/doubletsinglet
Overlap geneMid2
Upstream geneRipply1, Cldn2, Morc4, Rbm41, Gm719, E230019M04Rik, LOC622213, LOC100041446, EG245643, LOC666424, Prps1, Tsc22d3
Downstream geneLOC619612, Tex13, LOC632685, Vsig1, Psmd10, Atg4a, LOC100038961, Col4a6, Col4a5, Irs4, LOC633596
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469N13.T7 (MSMg01no469_n13.b1)MSMg01-469N13.TJ (MSMg01no469_n13.g1)
ACCAG552986AG552987
length796808
length of high quality
(start - end)
239 (75 - 313)43 (113 - 155)
definitionCHROMAT_FILE: MSMg01no469_n13.b1 PHD_FILE: MSMg01no469_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:34 2005CHROMAT_FILE: MSMg01no469_n13.g1 PHD_FILE: MSMg01no469_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCAATCTTCTGTGGCCGCTAAACGACNCAAATTCAAACACCATCCGCGG
AANTCTCAGTTTACANAAATGTACATGACTACCTGGATGGATCAGTTCAT
GGATGGACTTTTGAACAAGCTTAGATGCTGGAACCCCTTCTATCAAGGAA
TGGAAAATGTGAGGCAGGTAGACATGAACCACTCCCACACTTACTTGTAG
CTCCTGAAGCCAATTCCAGCCTTAGAGCCATTGGGCTGTATTTGGCTGTG
TATTACAAGTTGGCCAGATTTATTGCCATCAGGTCAGGCAAAACTGCCTT
TTATGGTGTGGTCTGTTCAGTTTTTTAAATATGCTGTGTTATTGTTATTG
GCTAGAATATTTATTACACTATTGTTGAACTATTTTTTATCAAATGCTTT
ACCCCAGGCTTGTTTGTACTGGGAGCTCTGGACCAATAGTGTCTCTCCTA
GTAACAGAAATATGAACATCTGTGGATTACACAGTCTTATCCTCTCTAAA
GATCCCAACCCATCCCAATGCTATATTATGAATTAAACAACCATATACGT
ATTCCTGAGCTCGTGTGTGCCTCTCCTTTTACATTTCCGCCGTAATAAAT
CAACGCCCTCTCATACTTTCCCCCCCTCTCCTCCCTCTTTTTCCTCTCTC
CTTTTTCCTTTTTTTTTCCCTTCTCTCCTTTCTCCTCCCTCATCCCTTCA
TATCCCATTTCCCTCTTACTCCCCCCTTACTCATCTATTTTATTTTTCCC
CCTCTACTCATTCCCTGTCCTTTCCTTCCCGCCCCTCTTCCCTCTN
ATTGAACTGCGAAGCCTGGGGGCGACTGTTCATCAACTTTAGGTGAACTA
TAGAATATCCCGCGCATTCAGGTGGAAGAATAAGTTTTAGAGGAAGGGAT
GAGAAAGAAGAGTGACACTGCAGGCTGTTTGCTACATGCTGACTTATTTA
TGTCAGCTATTGATGACAGCTGGGAGTCACAATCTTCACATCCCTCCTTA
CTTTGTGTCACTCACTCGGTCCCAAATGAAATGCACAGATAATGATCGTA
AGTTCTACACATTCCAATTAGCATTCATCCTTTGTTTTATGTTTGGTCAG
TTAGCTGGTTGTTTGTTTTTGCGCCCTCCCAACTCCCATTTCTCAACTTC
CCATTTACTCCTCCTTCCTTTCTTCCACCCTTAATTTTCAACCCTAAATT
ACCCATGCCCAACTCCTACTCCCTCTCCCCCTTCCCTATCTCTTCTTTTT
TTCACCTCTACCTTCTTTCCCCTCCATCTATTATCCCCCCCCCCTCCCTT
CAACCATATATTTCCCCCCTACATATTCTCCATGTTTTACCACTCAAATC
TCTTTTCCCCCCCCCACCTTTTCCCTTACAATCCACTTTTCTCCCCCCCT
TCTATCTTAACTCCCTTCCCCCCCACTTCCCTCTTTCTCCCTTTTTTCCC
CCCCTCTTTTTTCTCCCCTTTTCCCCCATCCCCTACTTCCCCCGCCCTTT
TTTCATTTCCCCTTCCTTCCCCCTTTATTTTCTTTATCCCCCTCTCCTTC
ATTTATATTTTATTTTCCCTATCCTCCCTTCCCCCGCCTCTTCTTTTTCC
TTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_n13.b1 MSMg01no469_n13.b1 CHROMAT_FILE:
MSMg01no469_n13.b1 PHD_FILE: MSMg01no469_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:34 2005
         (239 letters)



>mm_chrX_137301572_137302210
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgactacctggatggatcagttcatggatggacttttgaacaagcttagatgctggaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgactacctggatggatcagttcatggatggacttttgaacaagcttagatgctggaac 260

                                                                       
Query: 61  cccttctatcaaggaatggaaaatgtgaggcaggtagacatgaaccactcccacacttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccttctatcaaggaatggaaaatgtgaggcaggtagacatgaaccactcccacacttac 320

                                                                       
Query: 121 ttgtagctcctgaagccaattccagccttagagccattgggctgtatttggctgtgtatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtagctcctgaagccaattccagccttagagccattgggctgtatttggctgtgtatt 380

                                                                      
Query: 181 acaagttggccagatttattgccatcaggtcaggcaaaactgccttttatggtgtggtc 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaagttggccagatttattgccatcaggtcaggcaaaactgccttttatggtgtggtc 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)