Query= MSMg01no471_n06.b1 MSMg01no471_n06.b1 CHROMAT_FILE:
MSMg01no471_n06.b1 PHD_FILE: MSMg01no471_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:13 2005
(388 letters)
>mm_chrX_119884945_119885732
Length = 788
Score = 694 bits (359), Expect = 0.0
Identities = 382/399 (95%), Gaps = 17/399 (4%)
Strand = Plus / Plus
Query: 1 aatttgttcatattgcatatttatctttactgatttttgaatatttaaatttttagtgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatttgttcatattgcatatttatctttactgatttttgaatatttaaatttttagtgtg 260
Query: 61 tgtgagtcagtgtgcctgtgtgagtgtatgttcacatgtgtgtacaggtgcctatgtaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgagtcagtgtgcctgtgtgagtgtatgttcacatgtgtgtacaggtgcctatgtaga 320
Query: 121 cctttggaagtggatatcagatcctcaggaactatagttacatgtgattttgagccatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttggaagtggatatcagatcctcaggaactatagttacatgtgattttgagccatct 380
Query: 181 gacatgattgctaactagtgaactctggccttctatcaaagcagtatgtactcctaaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacatgattgctaactagtgaactctggccttctatcaaagcagtatgtactcctaaata 440
Query: 241 cagaaaattttttaaaa-------cttttcaaccagttgattgcattttcccttttatat 293
||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaaaa------aaaaaaaaaaacttttcaaccagttgattgcattttcccttttatat 494
Query: 294 ttaaatatttatttatgtatttatgtatgtatttatttaaatgtgtgagggtgtgtgtgt 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttaaatatttatttatgtatttatgtatgtatttatttaaatgtgtgagggtgtgtgtgt 554
Query: 354 gtgtgtgtgtgtg----ccacatacatccagtacctgag 388
||||||||||||| ||||||||||||||||||||||
Sbjct: 555 gtgtgtgtgtgtgtgtgccacatacatccagtacctgag 593
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space: 295241
Effective search space used: 295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_n06.g1 MSMg01no471_n06.g1 CHROMAT_FILE:
MSMg01no471_n06.g1 PHD_FILE: MSMg01no471_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:13 2005
(580 letters)
>mm_chrX_120080153_120081132
Length = 980
Score = 1075 bits (556), Expect = 0.0
Identities = 576/586 (98%), Gaps = 7/586 (1%)
Strand = Plus / Minus
Query: 1 caccaaaattaatatattttgatcattttatgttcatatttattctaatacaatttgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 caccaaaattaatatattttgatcattttatgttcatatttattctaatacaatttgtta 754
Query: 61 gaatgaagaacactgctacttatgcatgaactgaaagtttttcagtaaaacaataaatct 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 753 gaatgaagaacactgctacttatgcatgaactgaaagattttcagtaaaacaataaatct 694
Query: 121 agcaaatataccaaggatgtaatagatcttttatttgttccaagtgacttatattcacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 agcaaatataccaaggatgtaatagatcttttatttgttccaagtgacttatattcacct 634
Query: 181 tcatacacatacatgcacgcat------acacacacacacacacacacacacacactgaa 234
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 633 tcatacacatacatgcacgcatacacacacacacacacacacacacacacacacactgaa 574
Query: 235 ataaagagtactattttattgttgctagaagcataaatgttttgtgttatttgtcccatt 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ataaagagtactattttattgttgctagaagcataaatgttttgtgttatttgtcccatt 514
Query: 295 ataattttaatttgccttctgctatgaccaaatttcaatataaatatgcagtataaatat 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ataattttaatttgccttctgctatgaccaaatttcaatataaatatgcagtataaatat 454
Query: 355 agataattaagcttttaaaaatgttttttttaaattttatgcatataggtgttttgccta 414
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 453 agataattaagcttttaaaaatgtttttttt-aattttatgcatataggtgttttgccta 395
Query: 415 tgtttatatctgtacaccatctgtatgcattgtctgtggaagccaaaagtatacatgggt 474
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 394 tgtttatatctgtacaccatctgtatgcattttctgtggaagccaaaagtatacatgggt 335
Query: 475 gtgggtgttgtagcccctgagtgaagcccagtgaacattgaaaggcttttatacccccta 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gtgggtgttgtagcccctgagtgaagcccagtgaacattgaaaggcttttatacccccta 275
Query: 535 ttaatgcaagtgcctatgtctgctgtttttcctcatgacacaagat 580
|||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 274 ttaatgcaagtgcctatgtctgctgtttttcctcatgacaaaagat 229
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
