AAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCACTGTTTTGCAGCATCAAGTACAATGGGAACAGAGAGTAGGG
GCTGGTCCTGGGAAAGAGAAAGGGGCCAATCAGTCATTTTATCCTTCCTC
TCAGGTAGCAGTTTATTTTGGTTCAAGAAACAAATATACTTTCTTTCAAT
GAATTTTATAAGTGAACAGGAAATATTTCCATCTCTCAGAACTGCCTGTG
GAAATTTTATTGTGGTTATAGGAGTTTTTTTGGGTCTATTTTCCGAAGAA
CAATTAAAGCCAGGTATGTTTAAACATACCTGTATTAGCACCAACACGGA
ATGCTGAACCGCAACACTCTATCACTTCCTAGAGAATACATAACATACTA
AGTGCCTACCTCAACACTAAAATGAAGTGAAATAAAATCAAACAAATGTA
CCTTCGATAATTGTATCTAGTGCATTGGGAAGTTTATAAGATAATGAATC
AAAAAATTCAATTATCTTTATGATAAAAATAATTAGAAATGTTAAGAAGG
TTAAACAATTACTACAAGAAGGGGGAGGGAGAGACCTGGGTGAGAAACCA
CACACGGAGGGGAAGAGATGAACTTGATCAAGTACTGTGGGGGGTTGTGA
AACAGGAGTGCATTGATGAAGATCAGCAAAAAGAATGGAAACAGGCAACT
TTGTGAGGTAGGAGGTGAGAAAACCCTCTANGATGTACCAGAGACCTGGG
AGCTGAA

ACCATGATAGTGTTATGTCCGGTGGTXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCACTCGTAGTCGAATTACATCTAACTTCTC
CCCTTAGACTACGAAAGCCCTCCAGACCCTTCGGCAGATATGCTACAGAC
TCTAAGAGAGCAGAACGCAGAGCTTATAGCTATAACATGTAGCTAAGTTA
TTCGTACCATAGATCGAGAAAACACGGTCTCGCTGCCGATAAAATAATAT
CTATACGCTATCTTTGAACTTTGCATTTCTCTTTCGGGATAAGAAAGGGA
TAAATTTTCTATATAAGGAGGGAAATTATGCTAGCAACCGCTAGATATTA
ATCTTGAAGCGTACACCTAAAAGAATATAGTTACTTGAAAAAAATTCCGA
CGAGCGCCACTGGACGTAATCCCCACGTTGCCCTACTCTCTCTTGAGAGT
CACCTCTATCTTCTTTTTTCCATCTATGAGGAAATGCACACCCCGTCTGG
ACGGTCAGTTCGCACCCCCCCATACCCCTATATTTCCTGCTTTGCCGACT
TACATGGATATTGTCACCGTAGTTTATGCGGCCCGGGGAGACGCCCGACT
TTTTTTATTAACTGTCTCTTTTACGCGTTCCCAGTTGGTGCTACCCTTTC
CCAACACCCTATTCATATTTCGACCGTTCATCTCGCGGTTCGCTCCCAAA
TGATTACCCTAGTCGCAACACTGTGGTAGGCCACCCAACCGCTCAAAGTT
TCACCACGTGAGTGGATGCCGCCCCGTAAATAGTTGGCTATGTTATTTTC
CCCGCCTTATGATACTA

Query= MSMg01no471_p21.b1 MSMg01no471_p21.b1 CHROMAT_FILE:
MSMg01no471_p21.b1 PHD_FILE: MSMg01no471_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:27 2005
         (661 letters)



>mm_chrX_53409725_53410786
          Length = 1062

 Score =  377 bits (195), Expect = e-108
 Identities = 432/521 (82%), Gaps = 38/521 (7%)
 Strand = Plus / Minus

                                                                       
Query: 27  caagtacaatgggaacagagagtaggggctggtcctgggaa-agaga-aaggggccaatc 84
           |||| ||||||||||||||||| ||||||||| ||| |||| || || | ||||| ||||
Sbjct: 511 caagaacaatgggaacagagagaaggggctgggcct-ggaacagtgagatggggctaatc 453

                                                                       
Query: 85  agtcattttatccttcctctcaggtagcagtttattttggttcaagaaacaaatatactt 144
           |||| ||||||||| |||| ||| |||||||||| |||| ||||||||||||||||||||
Sbjct: 452 agtccttttatcctgcctcacagttagcagtttagtttgtttcaagaaacaaatatactt 393

                                                                       
Query: 145 tctttcaatgaattttataagtgaacaggaaatatttccatctctcagaac--tgcctgt 202
           |||||||||||||||| |||||||||||||||||||| |||||||||  ||  || | ||
Sbjct: 392 tctttcaatgaattttgtaagtgaacaggaaatattttcatctctca--acgctgacggt 335

                                                                       
Query: 203 ggaaattttattgtggttataggagtttttttgggtctattttccgaagaacaat-taaa 261
           |  |||||||| ||| ||||||||| ||||||||| ||||||||  ||||||||| ||| 
Sbjct: 334 gttaattttatagtgtttataggagattttttgggactattttcttaagaacaatgtaa- 276

                                                                       
Query: 262 gccaggtatgtt-taaacatacctgt-attagcaccaacacggaatgctga----acc-- 313
           ||| |||||||| | | ||||||||| || | |||| ||| ||||||||||    |||  
Sbjct: 275 gcctggtatgttgtca-catacctgtgataa-cacctacatggaatgctgagatcacctt 218

                                                                       
Query: 314 gcaac----ac--tctatcac-ttcctagagaatacataacatactaagtgcctacctca 366
           | |||    ||  ||||  || || || || |||||| ||||||||||| ||||| ||||
Sbjct: 217 g-aacctggacattctag-acgtttcttgacaatacacaacatactaagagcctatctca 160

                                                                       
Query: 367 acactaaaatgaagtgaaataaaatcaaacaaatgtaccttcgataattgtatctagtgc 426
           | | | ||||||| |||||||||||||||| ||||||||| | ||| |||||||| || |
Sbjct: 159 aaagtcaaatgaaatgaaataaaatcaaaccaatgtacctgctatatttgtatctcgtac 100

                                                                       
Query: 427 att-gggaagtttataagataatgaatcaaaaaa------ttcaattatctttatga-ta 478
            || ||||| |  |||||||||||||||||||||      ||||||||||||||||| ||
Sbjct: 99  ctttgggaacta-ataagataatgaatcaaaaaaagtaatttcaattatctttatgaata 41

                                                    
Query: 479 aaaataattagaaatgttaagaaggttaaacaattactaca 519
           |||||||||| ||||||||||||||||||| ||| ||||||
Sbjct: 40  aaaataattataaatgttaagaaggttaaaaaat-actaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1062
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1052
Effective search space:   684852
Effective search space used:   684852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)