BAC Information

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BAC

Clone NameMSMg01-473K04
ChromosomeX (Build37)
Map Location 158,994,425 - 158,994,633
singlet/doubletsinglet
Overlap geneReps2
Upstream geneRai2, Gm47, Nhs
Downstream geneLOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610, EG637051, Grpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473K04.T7 (MSMg01no473_k04.b1)MSMg01-473K04.TJ (MSMg01no473_k04.g1)
ACCAG555888AG555889
length758744
length of high quality
(start - end)
211 (52 - 262)418 (79 - 496)
definitionCHROMAT_FILE: MSMg01no473_k04.b1 PHD_FILE: MSMg01no473_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:48 2005CHROMAT_FILE: MSMg01no473_k04.g1 PHD_FILE: MSMg01no473_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNAAATCC
GCGGAATTCAGCTGTATTTCGCATTTCACTGTCTGCAGGCCATCTGGAGG
TGAAAGCTTGTTTCCTAGGCAAATGATTCTGGAGAAATGCCAGAGCCAAA
GTGGGAGAACGTGGGAAGTGACAGTGTCCTTAAGGGTATCTCGGAGTCCT
GGTACAGCTGTTAATGTTTGGAATGCTATATTTGCGTTCCATTGTTCCCC
AGACTGAATGCATTGGCCAGGGAGCTTATAGATACCAAGCATCTTGATTT
TTTTTTTTTTTTGCTTGAAGAAATATTTGTTTTTTTTGGAAGTTTCATGG
CCGACAGGAGAAGGTATTTTGTATGCTCTTGTCCTGTATTTTAGATCCAT
TTGTGAGTACCATCTGAGCGAGCTATTTCTGTGCAGAGAGGTCACAGTTC
TGGGTGACTCACCAAGACTCTGGAGTTTCTTTTTAACTTTTCCCTTTTGA
AATCCATTTCTGTCTTCAGCGCTGGAGAGATGCCCATTGTCGGTATATTA
TCACACATTAACAATGTTGACCATCTTTTCTTTAAGAGTATTTCTGTTTT
TCTTTCTCATGCCGATTCTTCTTTTTTTGCCCCCTGTCTTCCTCTTCTTA
CTGTTCACTTATGGCCATTGTCGTTAATTTTCTTTTTTTTTTGATTTAAT
TGTTTTCCTTCTCTCCTTCTTACATACTTTACTTTTACTCTATAATGACC
TTTCCATT
NGGCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGACTGGTACTCAAGCAGGTC
AGGAAGCAGGAGCTGATGCAGAGGCCATAGAGGGATGTTACTTACTGGCT
TGCTTCCCCTGACTTGCTCAGCTTGTTTTCTTATAGAACCCAAGACTACC
AGCCCAGGGATGGCACCACCCAGAATCGGCCCTCCTCCCTTGATCACTAA
TCGAAAAAAATGCCTTAAAGCTGGATTTCATGGAGGCCTTTCCTCAATGG
AAGCTCCTTTCTCTGTGATAACTCCAGCCTGTGTCAAGTTGACATACAAA
ACCAGCCAGTACAGCCATAGATGCAGGATCTGTGATATAGATGTATCCAT
TGGGGCTAAGATCCCCACAATCTGTTGATCTCTATACTGCATCCAGGTGT
GGTTTTCTGTCATGGTCCCCATTTGCTATAATGAGAAGCTTCTTTGATGC
AGGGTGGTAGCTACACTTACCTGTGGGTATCAGGATGAGATTTAGAATGT
AGTTAGGGATTATGCTGTGCTAGCAGAGCAGTGGTAGTAGATTCTAATGG
TCATGGGCCCACAAGCCTCAATAAGCTGCTTATGTTTCCAGCATCATGCC
TGGTCCCCCCCCTGTTGTAAGTGCCCTTACCCCATTATATCGCGGCCTTC
CCCCCCCCCTTTTGTGCGCCCCTTACTCCACTTTTCGTCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_k04.b1 MSMg01no473_k04.b1 CHROMAT_FILE:
MSMg01no473_k04.b1 PHD_FILE: MSMg01no473_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:48 2005
         (211 letters)



>mm_chrX_158994223_158994833
          Length = 611

 Score =  371 bits (192), Expect = e-107
 Identities = 205/212 (96%), Gaps = 6/212 (2%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcagctgtatt---tcgcatttcactgtctgcaggccatctggaggtgaaagcttg 59
           |||||||||||||||   ||   ||||||||||||||||||||||||||| |||||||||
Sbjct: 411 gaattcagctgtattgtgtc---tttcactgtctgcaggccatctggaggcgaaagcttg 355

                                                                       
Query: 60  tttcctaggcaaatgattctggagaaatgccagagccaaagtgggagaacgtgggaagtg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tttcctaggcaaatgattctggagaaatgccagagccaaagtgggagaacgtgggaagtg 295

                                                                       
Query: 120 acagtgtccttaagggtatctcggagtcctggtacagctgttaatgtttggaatgctata 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 acagtgtccttaagggtatctcggagtcctggtacagctgttaatgtttggaatgctata 235

                                           
Query: 180 tttgcgttccattgttccccagactgaatgca 211
           ||||||||||||||||||||||||||||||||
Sbjct: 234 tttgcgttccattgttccccagactgaatgca 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)