BAC Information

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BAC

Clone NameMSMg01-475K09
ChromosomeX (Build37)
Map Location 75,779,757 - 75,780,246
singlet/doubletsinglet
Overlap genePrrg1
Upstream geneTbl1x, EG628893, LOC667606, Prkx, Pbsn, OTTMUSG00000017866, LOC100042001, 5430402E10Rik, LOC628976, Obp1a, EG546335, EG628991, LOC236874, EG667658, 4930480E11Rik, EG667672
Downstream geneLOC667679, LOC667684, 4921509A18Rik, LOC667700, EG546337, EG629116, LOC636082, EG667736, LOC100041373, EG636104
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475K09.T7 (MSMg01no475_k09.b1)MSMg01-475K09.TJ (MSMg01no475_k09.g1)
ACCAG557425AG557426
length749735
length of high quality
(start - end)
492 (79 - 570)169 (324 - 492)
definitionCHROMAT_FILE: MSMg01no475_k09.b1 PHD_FILE: MSMg01no475_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:30 2005CHROMAT_FILE: MSMg01no475_k09.g1 PHD_FILE: MSMg01no475_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGAGATCC
GCGGAATTCAGCAAGCTTTTCAGAAGTCGGTTGTTTTATGACCACAAGAG
CATTGCTTAATGGTTTTCACCGCAGTTAGAACAGATATCTAAATGTTGTG
CCAACTCATAATGCTTTGTACCATTGATTTTCATCTTTATCCTTCTCTCA
TTTACTGTGCTAAAGTTGTATTGGACTTCTTGTTTTTCTCTATTTAAGTT
CCTTTATTAAACCTTAAAAATATAATGAACACATGAACACACACACACAC
ACACACCTTCACAAATTCTATTCTTTCCTGTTTCAGTGACCACTTGTGTT
ACTTGCCATTAAATCTCTAATATTCAGGAAAATTACTGAAACATGATATT
AAGTAAATATTTGGTTTTGGCTTTGAGACAAGATCTCATATATTCCAGGC
TGGCCTTCAAATTGCTATGTAACTAAGGATGACACTGATCCTCCTGCCTG
CACAGCCTACTGCTGGAATTATAAGTAAACATCACCATGCTGAGGTTTGC
ATGCGCCTGGGAATCAAACACAGACCCCTGTGAATGCTATGCAAACAGTC
TACCAAGTAAACATCTCTTGCCTTAAAGTAAATAACTATTTAATGATTAA
AGATTTGACTGAAAGAATGTCAGAATCTGTGTAAGAAAATGTATGACCAC
ATTTTGCCCTGTAATAACTCTGCTGTTGGAATAATCCGCTTTCCCTTCC
NNNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCAGAGAAGCACCTGAAAAATGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAGCCACTC
TGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCTCCAACTG
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCTAGATTCCCCTCAACAGAGGAGTGGATACA
GAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTTAGCCCAATGGATGGACCTGGAGGGTATTTT
CCCGAGTGAGGTAACACATTCCTCAAAAAATTCTCCCCTTATGTACTTCC
TGATTAGGGTATATTTCCCCCCATCCCCATCTTCCCCCTGATTTCCTCAT
CTACCTTGCCCATTCTTTTTTTCATCTTCCGAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_k09.b1 MSMg01no475_k09.b1 CHROMAT_FILE:
MSMg01no475_k09.b1 PHD_FILE: MSMg01no475_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:30 2005
         (492 letters)



>mm_chrX_75779478_75780369
          Length = 892

 Score =  909 bits (470), Expect = 0.0
 Identities = 486/492 (98%), Gaps = 2/492 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggttgttttatgaccacaagagcattgcttaatggttttcaccgcagttagaacagatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ggttgttttatgaccacaagagcattgcttaatggttttcaccgcagttagaacagatat 710

                                                                       
Query: 61  ctaaatgttgtgccaactcataatgctttgtaccattgattttcatctttatccttctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ctaaatgttgtgccaactcataatgctttgtaccattgattttcatctttatccttctct 650

                                                                       
Query: 121 catttactgtgctaaagttgtattggacttcttgtttttctctatttaagttcctttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 catttactgtgctaaagttgtattggacttcttgtttttctctatttaagttcctttatt 590

                                                                       
Query: 181 aaaccttaaaaatataatgaacacatgaacacacacacacacacacaccttcacaaattc 240
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 589 aaaccttaaaaatataatgaacacatga--acacacacacacacacaccttcacaaattc 532

                                                                       
Query: 241 tattctttcctgtttcagtgaccacttgtgttacttgccattaaatctctaatattcagg 300
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tattctttcctgcagcagtgaccacttgtgttacttgccattaaatctctaatattcagg 472

                                                                       
Query: 301 aaaattactgaaacatgatattaagtaaatatttggttttggctttgagacaagatctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aaaattactgaaacatgatattaagtaaatatttggttttggctttgagacaagatctca 412

                                                                       
Query: 361 tatattccaggctggccttcaaattgctatgtaactaaggatgacactgatcctcctgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tatattccaggctggccttcaaattgctatgtaactaaggatgacactgatcctcctgcc 352

                                                                       
Query: 421 tgcacagcctactgctggaattataagtaaacatcaccatgctgaggtttgcatgcgcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 351 tgcacagcctactgctggaattataagtaaacatcaccatgctgaggtttgcatgggcct 292

                       
Query: 481 gggaatcaaaca 492
           ||||||||||||
Sbjct: 291 gggaatcaaaca 280


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)