BAC Information

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BAC

Clone NameMSMg01-475O11
ChromosomeX (Build37)
Map Location 6,032,409 - 6,032,523
singlet/doubletsinglet
Overlap geneShroom4
Upstream geneMycs, LOC668969, LOC668970, OTTMUSG00000016453, LOC627412, LOC436185, LOC668971, LOC100043936, LOC668972, Nudt11, LOC208428, AU022751, Nudt10, Bmp15
Downstream geneLOC100043937, Dgkk, Ccnb3, Akap4, Clcn5, Usp27x, 2010204K13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475O11.T7 (MSMg01no475_o11.b1)MSMg01-475O11.TJ (MSMg01no475_o11.g1)
ACCAG557621AG557622
length764755
length of high quality
(start - end)
532 (74 - 605)121 (122 - 242)
definitionCHROMAT_FILE: MSMg01no475_o11.b1 PHD_FILE: MSMg01no475_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:50 2005CHROMAT_FILE: MSMg01no475_o11.g1 PHD_FILE: MSMg01no475_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAATCC
GCGGAATTCCATCACATAACCAAATTCACACAATATCTTTCCACGAATCC
AGCCCTTAAAAGGATAATAACAGAAAAAAAAAAAACAACAACAACATCAA
AAAAAAAAAAAAAACCAAAACACAAGGACGGAAACCATGGCCTAGAAAAA
GCAAGAAAGTCATCCTTAAACAAACCAAAAAAAAAAAAAAAAAAAAAAGA
CAGCCACAAGAACAGAATGCGAAATCTAACAACAAAAATAATAGGAATCA
ACAATTACTTTTCCTTAATATCTCTTATTATTTATGGACTCAATTCCCCA
ATAAAAACACATAGACTAACAGACTGTCTACACAAACATAACCCAACAAT
CTGCTGCTTACAGGAAACCCATCTCAGGAAAAAAGACAGACACTACCTCA
GAGTGAAAGGCTGGAAAAAATTTCCCAAGCAAATGGTCTGAAGAAACAAG
CTGGAGTAGCCATTCTAATATCAAAGAAAATCGATTTCCAACCCAAAGTT
ATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCT
CCAAGAAGAACTCTACATTCTGAATATCTATGCTCCAAATGCAAGGGCAG
CCAGATTCATTAAGGAAACTTTTAGTAAGCTGAAAGTACACATTGGACCT
CACACAATAACAGTGGGAGACTTCAATACCCCACTTTCATCATTGGGAAA
AATCATGGGAACAG
CCCCGATGATGTGGGTAGCCTGGGGGCGCCTGTTTCAAACTTTAGGTGAA
CTATAGAATTTCTGCAACAATTCTCAGACACTTGCTTAGGACATCATTTA
TCTTCCGGTACTAAATACCATACTCCCATTCCAGAGACCTTGCTAAAGTA
CTGAGCAGTGGTAGTAGGTGAAGCTATTAAACACATCCTGGTAATTCCAG
ATTACCAGGCATTGTAGTTATAAGGAATGAGAATAAAAGGAATTTTAAAA
TGTGCTTTTACTTGATATTTTCTGAGTGTGAGAGTCCCCTTTTCTTTCAG
AATATCCTTTTTTCCTATATCCAAGATTTAATTGGGATGGAGAGATGGCT
CAGTGTTTAAGAGCACCTACTGCTATTGCAGAGGATCCAAGTTTGGTTCT
CAGCACTCACACTGGGCGGATCACGACTGCTTCTAACTCCAGCTCCAGAA
GCACTTATCTCTGACCTATGCAGGCACCTGCACTCACAAGTTGTGTATGC
AATCACTCACTCTTGCACACTTGTCTTACCATTAGTGAATATGAAAGTTC
CTTTGCTCCATTCACTATTTTTCTGACCCCTCCCTCCTATTCGTTTTTTT
TATCATTACTGCCCTTTTTATCGCCTTACTCTACGCTCATTTGTTTTCTC
CCCCTCCCCCTTTCCTCTTTTGTTTTCACTCCCGTCTTCCTCCCGCTACC
CCGTTATTTCCTTCCCCTCCCCTTCCGCTTTCCTTTTTTTTCTCGTTTGC
GCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_o11.g1 MSMg01no475_o11.g1 CHROMAT_FILE:
MSMg01no475_o11.g1 PHD_FILE: MSMg01no475_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:50 2005
         (121 letters)



>mm_chrX_6032209_6032723
          Length = 515

 Score =  199 bits (103), Expect = 4e-56
 Identities = 114/121 (94%), Gaps = 6/121 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcccattccagagaccttgctaaagtactgagcagtggtagtaggtgaagctattaaa 60
           ||||||||||||||||||||      ||| ||||||||||||||||||||||||||||||
Sbjct: 315 actcccattccagagacctt------gtattgagcagtggtagtaggtgaagctattaaa 262

                                                                       
Query: 61  cacatcctggtaattccagattaccaggcattgtagttataaggaatgagaataaaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacatcctggtaattccagattaccaggcattgtagttataaggaatgagaataaaagga 202

            
Query: 121 a 121
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 515
Length adjustment: 8
Effective length of query: 113
Effective length of database: 507
Effective search space:    57291
Effective search space used:    57291
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)