BAC Information

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BAC

Clone NameMSMg01-476L21
ChromosomeX (Build37)
Map Location 161,834,202 - 161,834,455
singlet/doubletsinglet
Overlap genenone
Upstream geneFigf, Piga, Asb11, Asb9, Mospd2, Fancb, LOC627045, Glra2
Downstream geneLOC100040753, Gemin8, Gpm6b, Ofd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476L21.T7 (MSMg01no476_l21.b1)MSMg01-476L21.TJ (MSMg01no476_l21.g1)
ACCAG558261AG558262
length945840
length of high quality
(start - end)
188 (42 - 229)255 (73 - 327)
definitionCHROMAT_FILE: MSMg01no476_l21.b1 PHD_FILE: MSMg01no476_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:57 2005CHROMAT_FILE: MSMg01no476_l21.g1 PHD_FILE: MSMg01no476_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGACATCCGCGGAATT
CCTGATCTTTTCAGACTTTTATCATGAATGGGTGTTGGATCTTGTTGAAT
GCTTTTTCCGCATTTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTT
GTTTATATAATGGATTACATTGATGGATTTTAGTATATTAAAACATCTCT
GCATCCCTGGAATAAAACCTACTTGGTCAGGTTGCATGATTGCTTTATTG
TTTATATCTTCTTTATGTGAATCTCACATGTCCATCCCTTTCCTCCTGTT
CCCCCTCACCACCTTTTTTTTTTTCCCCCACCACCCCCCCCTTTATTTCC
CTCTTCTTTTTCTCCCCCTCCTATACCCCGCCCCTCTTCTCCTCCTACCA
TCATATTTTCTCTCCCCTTCCCCCTATTTTCCTTCCCCTTATTCCCTCCT
TTTTTCTTCTTTTCCCTACTTACCCTTTTTTCCTCTTCTTCTTTTCTCCC
CTCCTTACTCTCCTTTACCCCCTCCCCCCCCTCCTTATTTCCCACCTCTC
TACCTTCCTCTCTCTTTTCTCCCTCCTTTTTCCCTTTTTTCTTTACCCCC
TTCATCCTTCCCCTCCCTTTTCTCTTCTTTCCCCCCTCTTCCTTTTCCTT
TCCCCCTTCCTTCTCCTTTCTCTCCCTTATCCCCTTTCCACCCCCCTTTT
TTTATCCTTCTCCCTTCCCTTTCCCTTTTACCAATATTACCCGTTCCTCC
CCTCTTCATCATCTTCCTTCTTTTTACCCTTCTTTTCTTTCACCATTTCC
CCTCCTCTTACCTCCCTTCTCCCTACCTCTTTCACTCTCTCTTTTCCTTT
TTCTCCCCTATTTTCTCCTCTCCCCTTCTCCTTTCTTCCCTCCATTCTCC
TTTCTCTTACTGTTATCCCACTCTTCCTCTCTTTTCCTCTTATCC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACTCATAAAAACAGCAATTTTGCCAG
ACATCTGCCATTAAATAGTTTCTTATCACAGAGAGACAGATTTAGAAGCT
AATGGTGTTGGAAATGGCAAACGGCCAATTGTCACTTCTGGGGAACAATT
TAGTTGGAAGAAATAAATATTGTAGTTCGATAATAAGAGCTAGCATTTAT
CCTATAGTAGTATGTTGCATGCAGCAATCCTGGTAATATTTATTAAAGAA
CCTTTTAAATTAGTATGTTGTTTCTTTTCTTTTTCAAGCAAAGAAACTAA
GGACTGGCTATATTATTCGACCCCACTAATCCAGGAAGGATTAATCGGGC
GCACTCAGTCCTTTCTTGTTCCAGATCAGCATTTAATTTCGTTCTCTACA
TTCTCTTACCCTCCCGGTGTTCACGTATGCAACACCGCGTGCTTCCCCTT
TCCTCCCCCCCCCCCCGTTCTTTTACACCCCCTTCCGCTTTTCTCCTGTT
TTCCTCTTCCCCACTTTTCTCCTTCATTCCTCTTATCCCCCTTTGTTTAT
TCTTCTTTTTCGCCCCTTTTTTTCCTCTCTCTCCTTATTTATCCCCCCCT
CCCTTCCTTCTTTTTCTCCTCCCCCCCTCCCTTACCCCGTTCTTTATCTC
TCCCTCCCCTTTTTTCCTCCCCCCCCCCCCCTTTTTTCTCCCCCCCCCCC
CTCCCCTCTTTTTTTCCCCCTATCCCAATTACTTCTCCTCATCCCCTGTT
TTTTTTTTCACCCCCCCCCCCCTTTATTTTTTTTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_l21.g1 MSMg01no476_l21.g1 CHROMAT_FILE:
MSMg01no476_l21.g1 PHD_FILE: MSMg01no476_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:57 2005
         (255 letters)



>mm_chrX_161834002_161834656
          Length = 655

 Score =  484 bits (250), Expect = e-141
 Identities = 253/254 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcactcataaaaacagcaattttgccagacatctgccattaaatagtttcttatcacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcactcataaaaacagcaattttgccagacatctgccattaaatagtttcttatcacaga 260

                                                                       
Query: 61  gagacagatttagaagctaatggtgttggaaatggcaaacggccaattgtcacttctggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 gagacagatttagaagctaatggtgttggaaatggcaaacggccaattgtcacttctgga 320

                                                                       
Query: 121 gaacaatttagttggaagaaataaatattgtagttcgataataagagctagcatttatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacaatttagttggaagaaataaatattgtagttcgataataagagctagcatttatcc 380

                                                                       
Query: 181 tatagtagtatgttgcatgcagcaatcctggtaatatttattaaagaaccttttaaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatagtagtatgttgcatgcagcaatcctggtaatatttattaaagaaccttttaaatta 440

                         
Query: 241 gtatgttgtttctt 254
           ||||||||||||||
Sbjct: 441 gtatgttgtttctt 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)