BAC Information

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BAC

Clone NameMSMg01-476P11
ChromosomeX (Build37)
Map Location 110,916,292 - 110,916,628
singlet/doubletsinglet
Overlap geneDach2
Upstream geneEG623428, LOC100039112, Chm, EG664918
Downstream geneLOC237016, EG664945, EG634881, LOC100039201, Klhl4, Gm1866, EG546361
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476P11.T7 (MSMg01no476_p11.b1)MSMg01-476P11.TJ (MSMg01no476_p11.g1)
ACCAG558431AG558432
length746746
length of high quality
(start - end)
337 (323 - 659)306 (322 - 627)
definitionCHROMAT_FILE: MSMg01no476_p11.b1 PHD_FILE: MSMg01no476_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:15 2005CHROMAT_FILE: MSMg01no476_p11.g1 PHD_FILE: MSMg01no476_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXAATTCAAAGAGGATCCGCGGA
ATTCTTTGTTACTTCTGATCCCCATTTTGCTGAAAGGACCCTGATATAGC
TGTCTCTTGTGAGACTATGCAGGGGCCTAGCAAACACAGATGTGGATACT
CACAGTTAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAG
AAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACA
ATATGAACTAACCAGTAACCCCCGGAGCTCGTGTCTCTAGCTGCATATGT
ATCAGAAGATTTGTTTTTATTGGTGAACACACATATTATTGTGCAACTAT
AGAATTTCTATAAAACACTATATGTATCATAATAGTGTTTTGATGCAAGA
TGCTTTGAGTTCTATCTTTATCAATATATAGGATGAGCTTGGTGGTACAT
TCCTTGTAATTCTAACCTTCAGGAAATTGAAGAAAGAAGATTAGAAATTC
TAGGTGATGTTTGGCTTCATAGTGAGTCTGAGGCCTGCCTGGATTACATG
AAACTCTTTCTCATAAATGTTCATTATCATAGTCATGACACATATATTTT
ATTTCACTTACATTTTATAGAAATTTTCTTTTTTTTAAAATAAAAGTTTT
ATTTTCTTAGTCCTCAGGGAGAAGGCCTATTTCATAGATGTTCTTACAGG
ATGGAAGCATAAAGCAAGGTTGGGAGCTGCCGTGTTAGCTAAATGT
CATGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCCCTTCCCCATCTTT
TAATGGGGTTATTTGGATCTCTAGAATCTAAGTTCTTAACTTCTTTGTAT
ATATTGGATATTAGCCCTCTAATGAGTTATAGGGTTGGTATAAATCTTTT
CCCAATCTGTTGGTTCCCATTTTCTCCTAATGACAGTGTCCTTTGCCATG
CAGAAGCTTTGGAATTTTATGAGGTCCCATTTGTCAATTCTTGATCTTAG
AGATTAAGTCATTGTTGTTCTGTTTGGGAAACTTTCCCCTGTGTCCATGT
GTTCCAGACTCTTCCCCACTTTCTCTTCTATTAGATTCAGTGTATCTGGT
TTTATATGGAGGTCCTTATTCCACTTGGACTCGAGCTTTTTACAGGAAGA
TTAGAATGGATAAATATGCATTCTTCTACATGCTGACCTCCAATTAAACA
AGCACCATTTGTTGAAAATGCTGACTTTTCCCCACAGGATGGTTTTAGCT
ACTTTGTCAAAGATCAAGTGACCATAGGTATGTGGGTTCATTTCTTGGTC
TTCAATTCTATTCCATTGATCTATCTGCCTGTCACTGTACCAATACCATG
CTTTTTTTATCACTATTTCCCTGTACTACAGCTTGAAGTCAGGGATTGTG
ATTCCGCCATATATTCTTCAACCCGCCGAAAATATTTTTTGCTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_p11.b1 MSMg01no476_p11.b1 CHROMAT_FILE:
MSMg01no476_p11.b1 PHD_FILE: MSMg01no476_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:15 2005
         (337 letters)



>mm_chrX_110916092_110916828
          Length = 737

 Score =  621 bits (321), Expect = 0.0
 Identities = 333/337 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgaacacacatattattgtgcaactatagaatttctataaaacactatatgtatcataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgaacacacatattattgtgcaactatagaatttctataaaacactatatgtatcataa 260

                                                                       
Query: 61  tagtgttttgatgcaagatgctttgagttctatctttatcaatatataggatgagcttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtgttttgatgcaagatgctttgagttctatctttatcaatatataggatgagcttgg 320

                                                                       
Query: 121 tggtacattccttgtaattctaaccttcaggaaattgaagaaagaagattagaaattcta 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 tggtacattccttgtaattctaaccttcaggaaatggaagaaagaagattagaaattcta 380

                                                                       
Query: 181 ggtgatgtttggcttcatagtgagtctgaggcctgcctggattacatgaaactctttctc 240
           ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 381 ggtgatgtttggcttcatagtgagtctgaggcccgcctgggttacatgaaactctttctc 440

                                                                       
Query: 241 ataaatgttcattatcatagtcatgacacatatattttatttcacttacattttatagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaatgttcattatcatagtcatgacacatatattttatttcacttacattttatagaa 500

                                                
Query: 301 attttcttttttttaaaataaaagttttattttctta 337
           |||||||||||||| ||||||||||||||||||||||
Sbjct: 501 attttctttttttttaaataaaagttttattttctta 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)