CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGATCTTTCCTACTCTTTAATCATGAATGGATGTTGGATTTTGTCA
AATGCTTTCTCAGCATCTAACGAGAAGATCATGTGGTTTTGTCTTTGAGT
TTGTTTATATACTGGGTTACATTGATGGATTTCCGTATATTGAACCATCC
CTGCATCCCTGGGATGAAACCTCTTGGTCAGGATGGATGATTGTTTTGAT
GTGTTCTTGGATTTGGTTAGCAAGAACTTTATTGAGGATTTTTGCATCGA
TATTCCTAAGGCAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTT
TGTGGTTTAGGTATTAGAGTAATTGTGGCTTCATAGAATGATTTGGGTAG
AGTACCTTCTGCTGCTATTTTGTGGAATAGTTTGGGAAGAACTGGAATTA
GATCTTCTATGAAGGTCTGATAGAACTATGCACTAAACTCATCTGGTTCT
GGGCTTTTTCTGGTTGGGAGATTATTAATGAGTTCTTCTATTTCTTTTTT
TTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATAC
CAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCC
CCTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAG
TCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGACCATCTT

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCTCTCCACATTGCAAAACTTCAA
ACTACTTTGTACACTGCAAAATGAGATCTGAAATAACACAAAAATAAGAA
TAAAATGGAGAAATTTGAGTGATGGATTGGAAAGGAGAGTGGGTGTTGGA
ATAAACTAGGTACAATGAAAAATTATGTAAGGCTGATTTATAGTACTATA
TAACACTTTAATAAATCACAAAAAGCTTTTGAAAAAGGAGGTCAATGACA
TGTACTGAAAATTCACACAGATGCTCTTCTTTGTATTTATCCATATCATA
TTATTATTAGGTATTACAAAGCCTAAATCACAAATGGAAAATCTGAGGTT
CAGAGCATTTTAAAAAGATCATGTAATAGGAAATTACATCTGTAATTTGA
ATACTAAAGAGGTGGAGATAGAAAGATTCCCAGGAATTCAAATAACATCT
TGTTTTCATGGTGTCTTCCAGATAAGGTAACATTAGAGTGAAGCAAGTAC
CAAAACAACAAAAAGTTGTTCATAAAAGGGTAAAAATCACTAAACTACAT
GGAAAATGAATTTGGGTAGTTTTTTATATGATATAGTAAAAATAAAATAA
AATTTCCAGCAACTTTATGTACATAAAAATATGGATTCCAGAGAATCCTA
TTTCATTTTTCAAATCAATTTCACACTATTAACATCAAAACACATCAATA
TATATATTTTTAAATTTTTCACACAATT

Query= MSMg01no477_j23.g1 MSMg01no477_j23.g1 CHROMAT_FILE:
MSMg01no477_j23.g1 PHD_FILE: MSMg01no477_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:07 2005
         (639 letters)



>mm_chrX_79340888_79341926
          Length = 1039

 Score = 1205 bits (623), Expect = 0.0
 Identities = 635/639 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctctccacattgcaaaacttcaaactactttgtacactgcaaaatgagatctgaaata 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 744 atctctccacattgcaaaacttcaaactactttgtacactgcaaaatgagatctgaagca 685

                                                                       
Query: 61  acacaaaaataagaataaaatggagaaatttgagtgatggattggaaaggagagtgggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acacaaaaataagaataaaatggagaaatttgagtgatggattggaaaggagagtgggtg 625

                                                                       
Query: 121 ttggaataaactaggtacaatgaaaaattatgtaaggctgatttatagtactatataaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttggaataaactaggtacaatgaaaaattatgtaaggctgatttatagtactatataaca 565

                                                                       
Query: 181 ctttaataaatcacaaaaagcttttgaaaaaggaggtcaatgacatgtactgaaaattca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctttaataaatcacaaaaagcttttgaaaaaggaggtcaatgacatgtactgaaaattca 505

                                                                       
Query: 241 cacagatgctcttctttgtatttatccatatcatattattattaggtattacaaagccta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cacagatgctcttctttgtatttatccatatcatattattattaggtattacaaagccta 445

                                                                       
Query: 301 aatcacaaatggaaaatctgaggttcagagcattttaaaaagatcatgtaataggaaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatcacaaatggaaaatctgaggttcagagcattttaaaaagatcatgtaataggaaatt 385

                                                                       
Query: 361 acatctgtaatttgaatactaaagaggtggagatagaaagattcccaggaattcaaataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acatctgtaatttgaatactaaagaggtggagatagaaagattcccaggaattcaaataa 325

                                                                       
Query: 421 catcttgttttcatggtgtcttccagataaggtaacattagagtgaagcaagtaccaaaa 480
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 catcttgttttcatggtgtcttccagataaggtaacattagattgaagcaagtaccaaaa 265

                                                                       
Query: 481 caacaaaaagttgttcataaaagggtaaaaatcactaaactacatggaaaatgaatttgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caacaaaaagttgttcataaaagggtaaaaatcactaaactacatggaaaatgaatttgg 205

                                                                       
Query: 541 gtagttttttatatgatatagtaaaaataaaataaaatttccagcaactttatgtacata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gtagttttttatatgatatagtaaaaataaaataaaatttccagcaactttatgtacata 145

                                                  
Query: 601 aaaatatggattccagagaatcctatttcatttttcaaa 639
           |||||||||||||||||||||||| ||||||||||||||
Sbjct: 144 aaaatatggattccagagaatcctgtttcatttttcaaa 106


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)