Query= MSMg01no478_d06.b1 MSMg01no478_d06.b1 CHROMAT_FILE:
MSMg01no478_d06.b1 PHD_FILE: MSMg01no478_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:52 2005
(667 letters)
>mm_chrX_13666797_13667858
Length = 1062
Score = 1230 bits (636), Expect = 0.0
Identities = 655/664 (98%), Gaps = 6/664 (0%)
Strand = Plus / Minus
Query: 5 acagctcacaaccatctgtaaagctacagtgtactcatgtacataaaataaataaatctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 acagctcacaaccatctgtaaagctacagtgtactcatgtacataaaataaataaatctt 1003
Query: 65 aaaaaaaaatcacatctcatgatgctgatagaggactttaagcaggacataaataactcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 aaaaaaaaatcacatctcatgatgctgatagaggactttaagcaggacataaataactcc 943
Query: 125 cttaaagaaatacaggagaacacagata-aacagctagaagcccttaaagaggaaaccca 183
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 942 cttaaagaaatacaggagaacacagatattacagctagaagcccttaaagaggaaaccca 883
Query: 184 agaatacattcataaagaatattctaggtagaaggaacaacatgaatagcgatgcagaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 agaatacattcataaagaatattctaggtagaaggaacaacatgaatagcgatgcagaat 823
Query: 244 aaagaaagtcttaaatttacccagcataactttattttgatgaagcatagaatatatcaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 aaagaaagtcttaaatttacccagcataactttattttgatgaagcatagaatatatcaa 763
Query: 304 ttgaggggggtgtaaagtcagagtatagattaaggcaatgggccatgggaaagagtgaga 363
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 762 ttgaggggggtgtaaagtcagagta-----taaggcaatgggccatgggaaagagtgaga 708
Query: 364 ttttaggaacagtttacttggggactatgtagaagacagaatgagaagtagagtggcttt 423
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ttctaggaacagtttacttggggactatgtagaagacagaatgagaagtagagtggcttt 648
Query: 424 ggagcaatccctagaaagatagaaaggatagttctcagatcagaagaaaataggttctta 483
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 647 ggagcaatccctagaaagatagaaaggatagttctcagatcagaagaaaatgggttctta 588
Query: 484 gcactactgggaaaaggactcagaaatttgaacttagtgccatgtcccctatcccccaag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gcactactgggaaaaggactcagaaatttgaacttagtgccatgtcccctatcccccaag 528
Query: 544 gacatactgactagaaacactcaagaatcaagaaagacactggttctcctaaacacacca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gacatactgactagaaacactcaagaatcaagaaagacactggttctcctaaacacacca 468
Query: 604 gtgttttcattttttatctaaactaacagatctttccctgttgtggtatttagagattga 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gtgttttcattttttatctaaactaacagatctttccctgttgtggtatttagagattga 408
Query: 664 agac 667
||||
Sbjct: 407 agac 404
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1062
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1052
Effective search space: 691164
Effective search space used: 691164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_d06.g1 MSMg01no478_d06.g1 CHROMAT_FILE:
MSMg01no478_d06.g1 PHD_FILE: MSMg01no478_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:52 2005
(654 letters)
>mm_chrX_13457383_13458430
Length = 1048
Score = 1208 bits (625), Expect = 0.0
Identities = 645/655 (98%), Gaps = 8/655 (1%)
Strand = Plus / Plus
Query: 1 cataaagcaaccagaatcctgtgaactgtgaggcaacaatatattgagttaatttgtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaagcaaccagaatcctgtgaactgtgaggcaacaatatattgagttaatttgtttc 260
Query: 61 aacaaaacttggtaggttccattatatgtaatgactgtcagatctagtgcagtgacactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaaaacttggtaggttccattatatgtaatgactgtcagatctagtgcagtgacactt 320
Query: 121 tttacagcaaaatgatttcctttgaatgccagcatgcaagcagattttttt-cagattta 179
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tttatagcaaaatgatttcctttgaatgccagcatgcaagcagattttttttcagattta 380
Query: 180 tttttcataacttatataataagtggtagtcattttcatcctctattcccctctctcatc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttcataacttatataataagtggtagtcattttcatcctctattcccctctctcatc 440
Query: 240 cacatgcctctccaagtggaacctttctcaaccagtccccctcctaatttcacatcttct 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacatacctctccaagtggaacctttctcaaccagtccccctcctaatttcacatcttct 500
Query: 300 ttttttttgtgtgtgtggcccattgagtttaagtagagtttttttgccagagaatgggtg 359
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 tttt------gtgtgtggcccattgagtttaagtagagtttttt-gccagagaatgggtg 553
Query: 360 aaagatgatttatttgagcaagaccagctcatcagtggttacaccactgaagaaaatgac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaagatgatttatttgagcaagaccagctcatcagtggttacaccactgaagaaaatgac 613
Query: 420 ctcccccaacaattgttaactttcgaaagtctctcaggggcttctttctcccaggcatga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ctcccccaacaattgttaactttcgaaagtctctcaggggcttctttctcccaggcatga 673
Query: 480 tgaaatgttggtaggacctaatgtgcatatcaccacagctacagtgaatttgtgaatgca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tgaaatgttggtaggacctaatgtgcatatcaccacagctacagtgaatttgtgaatgca 733
Query: 540 actgctatctactgtctagatgacatcttttgctgtacatctccccatcctctgtttctt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 actgctatctactgtctagatgacatcttttgctgtacatctccccatcctctgtttctt 793
Query: 600 acattgctctgtgatgttccctgaaccatgaaaagggttatatagctatttcaga 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 acattgctctgtgatgttccctgaaccatgaaaagggttatatagctatttcaga 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1048
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1038
Effective search space: 668472
Effective search space used: 668472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
