BAC Information

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BAC

Clone NameMSMg01-479L17
ChromosomeX (Build37)
Map Location 51,375,886 - 51,376,422
singlet/doubletsinglet
Overlap genenone
Upstream geneC430049B03Rik, Plac1, 4632404H22Rik, 4930432H15Rik, LOC385527, Mospd1, LOC100040609, Etd, Cxx1c, LOC100040644, Cxx1a, Cxx1b, AW822252, 4930502E18Rik, 1700013H16Rik, EG547172, Zfp36l3, Xlr, LOC100040719, LOC100040730, LOC100040260, LOC100040271
Downstream geneLOC100040765, LOC194788, LOC100040789, LOC666072, LOC100040317, LOC625476, LOC625508, LOC666096, LOC100040867, LOC100040894, LOC666122, LOC666135, LOC100038960, EG666151, EG666161
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479L17.T7 (MSMg01no479_l17.b1)MSMg01-479L17.TJ (MSMg01no479_l17.g1)
ACCAG560542AG560543
length780770
length of high quality
(start - end)
624 (64 - 687)242 (72 - 313)
definitionCHROMAT_FILE: MSMg01no479_l17.b1 PHD_FILE: MSMg01no479_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:49 2005CHROMAT_FILE: MSMg01no479_l17.g1 PHD_FILE: MSMg01no479_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGCACTTCCGCCATCTAGTCCCAGGGTTGTTTTGGTGGGAGATTATCAT
GATTGGTTCTATTTCTTAAGGTGTTAAGGTGCTGTTTAGATGGTTTATCT
TATGGATTTGGTATATGTCTAGATAATTGCATATTTCACTCGTCTTTCGC
AGCGTTTTTTTTTTTTTAATTATTCATTACTTAACTATGAAGTTTATTCA
TTTCAAGTTTTTTTTTCCAGGCTGCATTCCATGGAATATCTTTGGCTGAA
CTGGAATTTGTTTTTTTTACGCGACTGACAAGGAATTTAGAGATTTTCCT
GCCTCAGCATAATAAGTCCTGGGATTAAATGTGTGTTTGCCCCCATTCCC
TGGCACCTAGGAATTAATTTTGAAGACTACTTACATACCTTCATATAGTT
CAAACCTTATAATATTACAGAATGGAAGCCTATCACAGTGATTCCTGCTT
TTAACCAGAGGACTATGGGTCTTATGAAATCATATCTCTTTTGACTTCTA
AGAAAGCCATACATACATAGCCAATTTGAGGCCAGCCAGTGCTTATCAAT
ACAATTTGGCCAAAATGGAAAGAAAAAAAAAACACAAAGTGAAAGTGCCT
TTCTCATTTTAAGAATGGGCTACATTATAATAACACACACACTCAATCAC
ATTCAGACTCACAGAAACAGACAGACACTCACTGAAACACACACAGACAC
TATCTGACAGAAACAGAGAGTGAGACCGAG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTGTGGAGATTCCTCAGAATATTGGAAA
TAGGTCTACCTGAAGACCCAGATGTACCACTCTTGGGCATATACCAAAAA
GATGTCCCACCATGCCCCAAGGCACATGTTTTTCTATGTTCATAACAGCC
TTGTTTATTATAGCTAGAAGCTGCAAATAACCCAGATGTCCCAAAACAGA
AGAATGGATACAGAAAATGTGGCTCACTTACACAATGAAATACTACTCAG
CTATTAAGAAACGAATATTTCCTGAGTTTTTCAGGCAAATGGATGTAACT
CGGAAATATCATTCTGAGTAAGGCAACTCAGAACCAAAAGGACATGCATG
GTATATCCTCATTAATAAGTGGATATTAACCAAAAAAGTGCAGAACACCT
GTATTCATTCCGCAGAACTTAAAAAAGTTATCAAGCCACAAGTCCCAAGT
GAGGACACCTCAATCCCACTTGGAAGGGAGAAAAAGAAATCACAGAGTGG
GTTGGGGTGGGTGGGAGGGTCTCAAGTGGGGATGGGGACCAGGAGTACTA
GAGAAGAAAATGATCAGGTATTGTTTTTAAAAAAACAAAACTGAAGCCCT
TATTTTCTTTATAAAGAATGAACACACGCAATCCAAGTGAATATGTTATT
GTTGAACTTCCCCACGTTTTATACCCTGTGTAGTGATAAACTTTCATTAC
CTTTTGCCGCCACTATATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_l17.b1 MSMg01no479_l17.b1 CHROMAT_FILE:
MSMg01no479_l17.b1 PHD_FILE: MSMg01no479_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:49 2005
         (624 letters)



>mm_chrX_51375681_51376705
          Length = 1025

 Score =  433 bits (224), Expect = e-125
 Identities = 473/568 (83%), Gaps = 47/568 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctagtcccagggtt-gttttgg-tgggagattatcatgattggttctatttc-ttaag 57
           ||||||||| ||||||  |||||| ||||||||| |||  | |||||||||||| |||||
Sbjct: 206 atctagtccgagggttctttttggttgggagattttcacaactggttctatttctttaag 265

                                                                       
Query: 58  gtgttaaggtg-ctgtttagatggtttatcttatggatttggtatatgtct-agataatt 115
           | ||||||| | ||||||| |||||||||||||||| |||||||| ||||| | ||||||
Sbjct: 266 gggttaagg-gactgtttacatggtttatcttatggttttggtatctgtctca-ataatt 323

                                                                       
Query: 116 gcatatttcactc-gtctttcgcagcgtttttttttttttaattattcattacttaacta 174
           || |||||||| | | ||||| ||  |||||||| ||     ||||||||||||||||||
Sbjct: 324 gcctatttcacccag-ctttctca--gtttttttctt-----ttattcattacttaacta 375

                                                                       
Query: 175 tgaagtttattcatt-tcaagtttttttttccaggctgcattccatggaatatctttggc 233
           || |||||| ||||| | |||  |||||||||||||||  |||| |||||||||||||||
Sbjct: 376 tgtagtttaatcattat-aag-ctttttttccaggctgggttccttggaatatctttggc 433

                                                                       
Query: 234 tgaactggaatttgttttttttacgc-gactgacaaggaatttagagattttcctgcctc 292
           |||||||||||||| | | |  || | | |||||| |||| | |||||||||||||||||
Sbjct: 434 tgaactggaatttgctctatagac-caggctgacatggaactcagagattttcctgcctc 492

                                                                       
Query: 293 agcataataagtcctgggattaaatgtgtgtttgccccc----attccctggcacctagg 348
           ||| || ||||||||||||||||| |||| | |||        ||||||||||| |||||
Sbjct: 493 agcctagtaagtcctgggattaaaggtgtatgtgc----taatattccctggcagctagg 548

                                                                       
Query: 349 aattaattttgaagactacttacataccttcatatagttcaaacc-ttataatattacag 407
           |||| ||||||||||||||||||||  ||||||||| |||| ||| ||| ||| ||| | 
Sbjct: 549 aatttattttgaagactacttacatttcttcatataattcacacccttacaatgttataa 608

                                                                       
Query: 408 aatggaag-cctatcacagtgattcctgcttttaaccagaggactatgggtcttatgaaa 466
           |||| ||| ||| ||||||||||||||||||||||||||||||||  | |    | |   
Sbjct: 609 aatgtaagtcct-tcacagtgattcctgcttttaaccagaggact--gcg----a-g--- 657

                                                                       
Query: 467 tcatatctcttttgacttctaagaaagccatacatacatagccaatt-tgaggccagcca 525
            ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||
Sbjct: 658 -catatctcttttgacttctaagacagccatacatacatagccaattct-aggccagcca 715

                                       
Query: 526 gtgcttatcaatacaat-ttggccaaaa 552
           ||||| ||||||||||| ||||| ||||
Sbjct: 716 gtgctaatcaatacaatcttggc-aaaa 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1025
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1015
Effective search space:   623210
Effective search space used:   623210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)