BAC Information

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BAC

Clone NameMSMg01-480B14
ChromosomeX (Build37)
Map Location 121,248,676 - 121,248,914
singlet/doubletsinglet
Overlap geneLOC100038940, LOC100038941, EG625699, LOC100038942
Upstream gene3110007F17Rik, LOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480B14.T7 (MSMg01no480_b14.b1)MSMg01-480B14.TJ (MSMg01no480_b14.g1)
ACCAG560821AG560822
length726717
length of high quality
(start - end)		628 (50 - 677)239 (77 - 315)
definitionCHROMAT_FILE: MSMg01no480_b14.b1 PHD_FILE: MSMg01no480_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:18 2005CHROMAT_FILE: MSMg01no480_b14.g1 PHD_FILE: MSMg01no480_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:18 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NAACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGATCCG
CGGAATTCATGAAATTTCTCGGCAAATGGGTGGAACTAGAAAATATCATC
CTGAGTGAGGTAACCCAATCATAAAAGAACACACATGGTATGCACTCACT
GATAAGTGGATATTAGCCCAGAAACTCAGAATATCCAAGATTTAATTTGC
AAAACACATGAAACTCAAGAAGGAAGAAAAAAGTGTGGATGTTTCATTCT
TTCTTAGATGCGGGAACAAAATACTTAGGGAAAGAAATATGGAGACAAAG
TGTGGAGCAGAGACTGAAGGAAAGACCATCCAGAGACTGCCCCACCTGGG
GATCCATCCCATGTACAATTACCAAATACAGACTCTATTGTGGATGCCAA
GAAGTGTTTGCTGAAAGAAGCCTGATATAGCTGTGTCCTGAGAGGCTCTG
CCAGAGCCTGACAAATAGAGAGGTTGATGTTCAATGCCAACCATGGGACT
GAGCATAGGTTCCCCAAGGTAGGATTTCGAGAAAGGACTGATGGAGCTGA
AGAAGTTTGCAGCCCCATAGGAAGAACAATAATATCAACCAACCAGACCC
TCAGAGCTCACAGGGACTAAGTCACCAACCACAGAATACACATGGAGTGA
CCCATGGTTCCAGCCACACATGTAGCAGAGTATGGCCTTTTTGGACATCA
GTGGAAAGAGAGGCCCTTGGTCCTGG

TTTACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCAAAAATTCATATGAAGAGACTGCACCACTGCCT
ATATTCAATTGTCTGCCAACGCCTCATGTATGATCATGCATCTAAATGCC
TCCATAAAAGTGTTACCGAATTCTGGTTTCCAGCAGATGAACATGCATTG
TTTCATGGAAATATGTGTGTATGTGTTGGTCTACTATACCTGGTTATATG
TATAACATTACCTATATACTTGTGAATATACATATACTTTGCTTTATAAA
ATAGTCTTTAAATGATTCTTATACTACAATTCTGGATTTGATACTGAATG
TGGAAAAAGAATGCTAGTCTCCTATTCTGTTACCAGAATAATCTTTTATC
CAATTGCATAAACGCACAGGCACAGATTAGTCTTATTATCACTATCTGAT
AGATGGTCAATATTTCTATTAACTACTCAATAAATTTAACATTATTTAGT
AGTTAATATATATTCACAATTCCTTTCCATTCATCCCATGTCATGTTCCC
TGGATACATAGGAAAAAGTCTGCCCTTAATCTCTACATCTGAGGTCTGAA
AAGATAAATCTAGGAGAATCATTGTACTTCTTGTGGAAAAGACCTGTTGT
CAATGTGGCTTTTAAGTCTGAGATTCAAAGTGTGAGATGTTATCATTTGT
GGCTGCAGATCATGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_b14.g1 MSMg01no480_b14.g1 CHROMAT_FILE:
MSMg01no480_b14.g1 PHD_FILE: MSMg01no480_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:18 2005
         (239 letters)



>mm_chrX_121248476_121249114
          Length = 639

 Score =  356 bits (184), Expect = e-103
 Identities = 226/240 (94%), Gaps = 2/240 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgaagagactgca-ccactgcctatattcaattgtctgccaacgcctcatgtatgatc 59
           ||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 439 tatgaagagactgcatcc-ctgcctatattcaattgtctgccaacacctcatgtatgatc 381

                                                                       
Query: 60  atgcatctaaatgcctccataaaagtgttaccgaattctggtttccagcagatgaacatg 119
           |||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct: 380 atgcatctaaatgccttcatgaaagtgttacctaattctggtttccaacagatgaacatg 321

                                                                       
Query: 120 cattgtttcatggaaatatgtgtgtatgtgttggtctactatacctggttatatgtataa 179
           ||||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 320 cattgtttcattgaaatatttgtgaatgtgttggtctactatacctggttaaatgtacaa 261

                                                                       
Query: 180 cattacctatatacttgtgaatatacatatactttgctttataaaatagtctttaaatga 239
           |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 260 cattacttatatacttgtgaatatatatatactttgctttataaaatagtctttaaatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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