NAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCCTGTATCGCGGCATATAAAGTTTGCAAGTACAATAGGCC
TCTCTTTCCAGTGATGGCCTACTAGGCCATCTTTTGATACAAATGCAGCT
AGAGTCAAGAGCTCCGGGTACTAGTTAGTTCTAACATTGTTGCACCTACA
GGTTTGCAGATATCTTTAGCTCCTTGGATACTTTCTCTAGCTCCTCCATG
GGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTATGTGT
TTGATAGGCCCCGGCCTAGTCTCTCTAGAGACAGCTATATCAGGGGCCTT
TCAGCAAATGCTTCCTAGTGTATGCAATGGTGTCATCCTTTGGAGGATAA
TTATGGGATGGATCCCTGGATATGGCAGTCTCTAGACGGTCCATCCATTT
GTCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGATTGTTT
CCAATTCTAAGAAGGGGCAAAGTGTCCACACTTTGGTCTTCATTCTTCTT
CAGTTTCATGTGTTTTGCAAATTGTGTCTTATATCTCGGGTATACTAAGT
TTCTGATAATATCCACTTATCAGTGAGTACATATCATTTGAGTTCTTTTG
TGATTGTGTTACCTCACTCAGGATGATGCCCACCAGTTCCAAACTTTTGC
TTAGGAATTTCATAAATT

NNNACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGGCAATGTCTTCTGTAA
GATTAGTGATGGGTCTAAGTTAACTAACTTTGCTTCTCTCAGGGAAGGGT
AAGACTCTCATGTTTATCACCACAGTTTCAGGGACCAAGAACTGAGTCCT
GACAGAGCTCTTCGAGGAGAGTCAAATGAAGGAAGGAAGATAAGAAGAAA
GAGAATGGAGATGGGTGAGCAGATTCTGGTAAGTAGAGAAAGATCTAGAA
GTGAAGTTATGATGAAGGATTTTATGNCTTGATGTATCAAGGAACTGGAG
CAGCCATACAGACTCCTATTTTCATTAGTTCTTTTGTAGCTACCTTCATA
TGTATGTGGCTTTCTTGCTGGTCCACATGACCATTACTATCTTTGACAGA
TGTAGTTCCCTACTCTCTGGGGTTGGTAAGAAACTCTGTGCATTGGTTCA
ATAATTTTATGGCATGTCTTTGGTAGAATGTGTATATCACCTATTTCATC
TTTGGGTCATTGTGGCTCTCTGTATGGGCCTCCCAGTTTAAATGTGGGTT
CCACAAGGCACAAGGTTCCTCTGTCTTACTTACAGAATTGGTATATGTTG
AGTAGAGTACATACTATTTCATTCTCCTAATTAGGTGAGGCAGAAGGGGC
AGATATAACTTTGACCT

Query= MSMg01no480_d13.g1 MSMg01no480_d13.g1 CHROMAT_FILE:
MSMg01no480_d13.g1 PHD_FILE: MSMg01no480_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:27 2005
         (370 letters)



>mm_chrX_77040011_77040780
          Length = 770

 Score =  708 bits (366), Expect = 0.0
 Identities = 369/370 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgatgtatcaaggaactggagcagccatacagactcctattttcattagttcttttgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgatgtatcaaggaactggagcagccatacagactcctattttcattagttcttttgta 260

                                                                       
Query: 61  gctaccttcatatgtatgtggctttcttgctggtccacatgaccattactatctttgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctaccttcatatgtatgtggctttcttgctggtccacatgaccattactatctttgaca 320

                                                                       
Query: 121 gatgtagttccctactctctggggttggtaagaaactctgtgcattggttcaataatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgtagttccctactctctggggttggtaagaaactctgtgcattggttcaataatttt 380

                                                                       
Query: 181 atggcatgtctttggtagaatgtgtatatcacctatttcatctttgggtcattgtggctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggcatgtctttggtagaatgtgtatatcacctatttcatctttgggtcattgtggctc 440

                                                                       
Query: 241 tctgtatgggcctcccagtttaaatgtgggttccacaaggcacaaggttcctctgtctta 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgtatgggcctcccagtctaaatgtgggttccacaaggcacaaggttcctctgtctta 500

                                                                       
Query: 301 cttacagaattggtatatgttgagtagagtacatactatttcattctcctaattaggtga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttacagaattggtatatgttgagtagagtacatactatttcattctcctaattaggtga 560

                     
Query: 361 ggcagaaggg 370
           ||||||||||
Sbjct: 561 ggcagaaggg 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)