NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTAAATGTTGTGAAATATTCATGCATATGACTAAAGCTTTC
CAGAAAACACAGAATTAAAATCGATGTGAAAATATGTATATTTTCCTTTT
ATAACTTTCTTAACAATGTAAGTAATCTCATTTTAACTTCCATCTAGATG
CAGCTTGCCCACTATTGCCATACATATTTACCATCCATGCAAGACTAGAA
AACATCACACTGCTCTATGTTCTTTTGTAACTTCCTGGCAAAATGTAAAC
GCCATATAACACCAAATATGCTCTGTTCTGGTGCTGCCTTGTTTATAGAC
TGCTGGTCACCACCAGAAGCAACAGTATGAATAAGATTTGCAAAAGACTA
ATAATCAGTCATTCAATTCAATTGTCTTTTGACTCCTGTGGCCATTTTAT
CATTATAGATTTTATTTTCTTCATTTATCCACTCATGTCTTATCATGCTT
GGTTTTTAATTATCTCCATTGTGTTTGATCTGATTTCCTTCTGACTCACT
CTCAACAGATTTCTTGGGGACAAGCCAGGCTACTCACTAAGAATTCCGTA
AATGTACATTCCATGTAAAAACATGGTACATTCTATGATCCCAGCAACAA
AATGCTAACAGAGATAGATAACAAGATTACTCCAATCTCAGATACATTTG
GATTGCTAGGCAACCTAAG

NNNACAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTACCAGCACACTTCCAGGGCCAGGGAGCAGGAGTT
GGTGGGTTGGGGAGCAGGGTGGGGGGAGGGTATAGGGGACTTTGGNGATA
NNCTTNNGAATGTATTTATATAAATATCTACCAAAAAATGCCTTATCAAC
ACATAATATCAAACCCCCGCCTATAGCTGCTCCACACGCCTCGCCCGACT
TTTTTTCTTGCCACTCAAACCTATAGCCCTGACCTTGATTCTTACAACAC
CCATCCATCACAACGCTTTTCCTCCATTTAACCCGCACACCCGCCCCGCC
AAAGGACGATACTTTTCCTCCCCCCACACCCACCTTACTTCCATCCACCC
CTTATCAACCTTCACCCCTCCCATCACCCCCCCCTTTCTATCTCCACCCC
GCCTTCACAATCCTTAAACTTCTATCCCCACCCCCATCCCCACCCTCCCA
CCCCCCCCATGCACCCCCGCTCGTCCTCTTCCTTTATCTCCCCCCCACCA
CACCCCATCCTTCTCTTTTTCATCCCCACTACCTATTTTTCCCCGCCAAA
TATATTATAACCCCCCCTCCTCCCTTTCCCCCTCCCCCTCTATTACTTTC
TCTCCTCCCTCCTCCCCCCCCCCCCTTATATTTTTTTCCCCCTCATCCCC
CTCCCCCCCCCCCCCCCCCCTTATCCTCCTCCACCCCCCCCCTTCCCCCC
TTTCCGTTTCACCCCTCAG

Query= MSMg01no480_e16.b1 MSMg01no480_e16.b1 CHROMAT_FILE:
MSMg01no480_e16.b1 PHD_FILE: MSMg01no480_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:33 2005
         (668 letters)



>mm_chrX_128597297_128598364
          Length = 1068

 Score = 1261 bits (652), Expect = 0.0
 Identities = 661/664 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaaatgttgtgaaatattcatgcatatgactaaagctttccagaaaacacaga 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 gaattcttaaatgatgtgaaatattcatgcatatgactaaagctttccagaaaacacaga 809

                                                                       
Query: 65  attaaaatcgatgtgaaaatatgtatattttccttttataactttcttaacaatgtaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 attaaaatcgatgtgaaaatatgtatattttccttttataactttcttaacaatgtaagt 749

                                                                       
Query: 125 aatctcattttaacttccatctagatgcagcttgcccactattgccatacatatttacca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 aatctcattttaacttccatctagatgcagcttgcccactattgccatacatatttacca 689

                                                                       
Query: 185 tccatgcaagactagaaaacatcacactgctctatgttcttttgtaacttcctggcaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tccatgcaagactagaaaacatcacactgctctatgttcttttgtaacttcctggcaaaa 629

                                                                       
Query: 245 tgtaaacgccatataacaccaaatatgctctgttctggtgctgccttgtttatagactgc 304
           |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 628 tgtaaacgccatataacaccaaatatgcactgttctggtgctgccttggttatagactgc 569

                                                                       
Query: 305 tggtcaccaccagaagcaacagtatgaataagatttgcaaaagactaataatcagtcatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tggtcaccaccagaagcaacagtatgaataagatttgcaaaagactaataatcagtcatt 509

                                                                       
Query: 365 caattcaattgtcttttgactcctgtggccattttatcattatagattttattttcttca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 caattcaattgtcttttgactcctgtggccattttatcattatagattttattttcttca 449

                                                                       
Query: 425 tttatccactcatgtcttatcatgcttggtttttaattatctccattgtgtttgatctga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tttatccactcatgtcttatcatgcttggtttttaattatctccattgtgtttgatctga 389

                                                                       
Query: 485 tttccttctgactcactctcaacagatttcttggggacaagccaggctactcactaagaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tttccttctgactcactctcaacagatttcttggggacaagccaggctactcactaagaa 329

                                                                       
Query: 545 ttccgtaaatgtacattccatgtaaaaacatggtacattctatgatcccagcaacaaaat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttccgtaaatgtacattccatgtaaaaacatggtacattctatgatcccagcaacaaaat 269

                                                                       
Query: 605 gctaacagagatagataacaagattactccaatctcagatacatttggattgctaggcaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gctaacagagatagataacaagattactccaatctcagatacatttggattgctaggcaa 209

               
Query: 665 ccta 668
           ||||
Sbjct: 208 ccta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)