BAC Information

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BAC

Clone NameMSMg01-481B02
ChromosomeX (Build37)
Map Location 85,145,277 - 85,145,588
singlet/doubletsinglet
Overlap genenone
Upstream geneIl1rapl1, LOC667876
Downstream geneEG667883, LOC667891, EG245506, LOC667911, LOC100041707, EG436213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481B02.T7 (MSMg01no481_b02.b1)MSMg01-481B02.TJ (MSMg01no481_b02.g1)
ACCAG561560AG561561
length755759
length of high quality
(start - end)
694 (42 - 735)657 (69 - 725)
definitionCHROMAT_FILE: MSMg01no481_b02.b1 PHD_FILE: MSMg01no481_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:34 2005CHROMAT_FILE: MSMg01no481_b02.g1 PHD_FILE: MSMg01no481_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTAATAATATCTTAAATAGTTGTCTTATACCCAGAGATAAATGCAGTCC
TCACACTTTATCTAGGAAAATTCCCTTTGAAAAATACAGGGAGGAATTAG
GAAAACAACTAAACAAAATGTAGTTGTGGAACCCAGTATTATTGTATTTA
TCACCAACTGCAAATAAGTTTCAGGGAACAATGCCCAGGAAAAAAAAAGT
AGAAATATTGTAGCAGTAAAAGGAACAAGTTGTTTAATGTGGTAAAGGGT
ATCCTAGTAGTGTCAGAAGCTACACTCAAATCATTGCCAACATGACTCCC
TCAACATGAGCTGGAAAAGGATAACAATGAGCACCCAAATGTGAAAAGAG
AAAAGGCCTCAGCTATCACAGAGAATTATATTAACTTTATGTTCATAGCA
GCCTTATTTATTATAATTGCCAGAAGCTGGAAAGAACCCAGATGTCCCTC
AACAGAGAAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACT
ACTTAGCTGTTAAAAACAATGACTTCAAGAAATGCTTAGGCAAATGGATG
GGACTAGAAAATATCATCTCAGTCACAAAAGAATAACATGTTATGCACTC
ACTGATAAGTGGATATTAGCCAGAAGGCACCAAATACCCAAGATACAATT
CACAGACCACATGAAACTCAAGACAAAGGAAGACCAAAATGTGGGTATTG
CAGTN
ATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTCAAATTCACCGAACTGTGTCCCTCTTTGC
CAATACCTCAGTACTGCTTGTATATTCTTGGAAGTGTGGCCTCCTGATGG
AGCACAGTTGTCTTAGCAGTGACTAATATCTTTTTTTTTCAATTTGGATT
AGATATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTCCCCCATA
CTGCCCCCTGCCCTGCTCCCCTGCCCACCCAGTCACACTCCTTGGCCCTG
GCATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGACCAAGAGGCCCCC
TCTTCCCAATGATGGCCGACTAGGCCATCTTCTGCTACATATGCAGCTAG
AGACACAAGCTTTGGGGGGTACTGGGTAGTTCATATTGTTCCACCTATAG
GGTTGCAGACCCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTG
GGGGCCCTGTGTTTCATTGTATAGATGACTGTGAGCATCCACTTCTGTAT
TTGCCAGGCACTGGCCTAGCCTCACATGAGACAGCTATATAGGGTCCTTT
CAGCGAAATCTTGCTGGCTTATGCAATAGCATCTGCATTTGGTGGCTGAT
TATGTGATGGATCCCCAGGTGGGGCAGTCTCTGGATGGGCCATCATTTCG
TCTCAGCTCCAAACTCTGTCTCTGTAACTCCTTCCATGGGTATTTTGGTC
CCCATTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_b02.g1 MSMg01no481_b02.g1 CHROMAT_FILE:
MSMg01no481_b02.g1 PHD_FILE: MSMg01no481_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:34 2005
         (657 letters)



>mm_chrX_85145277_85146333
          Length = 1057

 Score =  543 bits (281), Expect = e-158
 Identities = 305/313 (97%), Gaps = 1/313 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   caaattcaccgaactgtgtccctctttgccaatacctcagtactgcttgtatattcttgg 63
           |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 312 caaactcaccgaactgtgtccctctttgcccatacctcagtactgcttgtatattcttgg 253

                                                                       
Query: 64  aagtgtggcctcctgatggagcacagttgtcttagcagtgactaatatctttttttttca 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 252 aagtgtggcctcctgctggagcacagttgtcttagcagtgactaatatcttttttttcca 193

                                                                       
Query: 124 atttggattagatattttcttcatttacatttcaaatgctatcccaaaagtcccccatac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 atttggattagatattttcttcatttacatttcaaatgctatcccaaaagtcccccatac 133

                                                                       
Query: 184 tgccccctgccctgctcccctgcccacccagtcacactccttggccctggcattcccctg 243
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 132 tgccccctgccctgctcccctgcccacccactcacactccttggccctggcattcccctg 73

                                                                       
Query: 244 tactggggcatataaagtttgcaagaccaagaggccccctcttcccaatgatggccgact 303
           |||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||
Sbjct: 72  tactggggcatataaagtttacaagaccaaggggcccc-tcttcccaatgatggccgact 14

                        
Query: 304 aggccatcttctg 316
           |||||||||||||
Sbjct: 13  aggccatcttctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)