BAC Information

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BAC

Clone NameMSMg01-482A02
ChromosomeX (Build37)
Map Location 117,847,840 - 117,988,673
singlet/doubletdoublet
Overlap genePcdh11x
Upstream genePabpc5, LOC236983, LOC674318, EG545741, LOC100039461, H2afb3
Downstream geneLOC245576, LOC385419, EG434907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482A02.T7 (MSMg01no482_a02.b1)MSMg01-482A02.TJ (MSMg01no482_a02.g1)
ACCAG562278AG562279
length711727
length of high quality
(start - end)		665 (37 - 701)632 (89 - 720)
definitionCHROMAT_FILE: MSMg01no482_a02.b1 PHD_FILE: MSMg01no482_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:49 2005CHROMAT_FILE: MSMg01no482_a02.g1 PHD_FILE: MSMg01no482_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,847,840 - 117,848,483)(117,988,127 - 117,988,673)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTC
TTTTCCCAAGAAGTTATGCTCCACCTGAAGGCTAATTAATTAAGTAGCAT
GTACTCAGAGAAAATATAACTCCATTTTTGGATTTTAGTCACTTCCTGGG
TAGAAAAAAATGTTGGATGAAACCCAAGAGAACAGCAATGAGTCATTTCA
TTGTGTGACAGATATATCCCTACTCTACTATCTCTTGTTTTGCAAATCTA
CTATGTGTGTATATTAAATTTATTTAGGGCAGAATATTTTTATCCAACAT
GTACTTGTAGTTATGTAAATCCATCTGTAAATCAAGGAGCACCTCTTTCT
AAAAACTGTATTCTTAGCCTACAATGATGCCAGATCATGAAGGAAATAAT
GTTATTTAAATCAGTTCACCAAATGTGAAATGCTTTGAAAATTCTGTCCA
CTAGTATTTCTAAGCAGTGGTATAACTATCAATGCTATTAGTTAACTGAA
TAAAGTATTTGAAAATGGTGACTCTAGCTTGTTAAGTATACAACAATTAG
TTTTCAATTGTCATTGTTTTACAAACCAAAATTAACAGCTTTATACTTCT
ACTGAAAGAGTAAAATGTTGTTTTATATACAATACTTTTTAAAATTTTTT
ATTGTTTTTTAAACTTATTTTTACACTCCATATTCCATTCCCTGTCCCCA
TATCCACCCTN

GGTAGAGCATGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTTTCTGAAAA
CTTTTCTTAGGGACTTCATGCTTCATCATGTGACTTGCTTTGAGGTATTA
ATTAGGAGAGGCAATCATGAGGAGCATTTGTTCCATCTCAGTTATTCTTC
CTCATCCCTGGCTTTATTGGTTCATATACTTTAATAAAACATATGTTGGC
CTCCATCATTGAACACAGCCCCCTTCTGTATACAGGATTTGCAAAACTGA
CCTAATTAGATTCCCTAGTGGCCAATTTTTCCTTTTGGTTGGAATCATGT
CAAAGAGGAGTCCTAGGATCATTTGTAACAAAGCAGCTTTTTTCTAGCAA
CACTCTTCCAAGGTATATCAATGATGTGGGCCATTAAAAACAAAAACATG
AACAAAAACAAAAACAAAAAACTGAACTTTCAGAAAGAACAAGTATCTAG
TATGCAGCTCCTTTATTAAAAACCAACCCAACCAAATAAGCAGCATTTAA
TATAGAATTTCTCATATGGAAATACATATTCTCCTACCTAAAATTTTGCT
CACTGATTACTGTCGTCCTAATTTTTATAATTATGTGTAATTTTTAAACA
TTTCAGGAGTCAGGGTGTTATAATACTGATTTGTTTGAAGATGCTTGAAT
TTAGCTATGGTTACATTTTCAAAAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_a02.b1 MSMg01no482_a02.b1 CHROMAT_FILE:
MSMg01no482_a02.b1 PHD_FILE: MSMg01no482_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:49 2005
         (665 letters)



>mm_chrX_117847619_117848683
          Length = 1065

 Score = 1245 bits (644), Expect = 0.0
 Identities = 644/644 (100%)
 Strand = Plus / Plus

                                                                       
Query: 22  aagaagttatgctccacctgaaggctaattaattaagtagcatgtactcagagaaaatat 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 aagaagttatgctccacctgaaggctaattaattaagtagcatgtactcagagaaaatat 281

                                                                       
Query: 82  aactccatttttggattttagtcacttcctgggtagaaaaaaatgttggatgaaacccaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aactccatttttggattttagtcacttcctgggtagaaaaaaatgttggatgaaacccaa 341

                                                                       
Query: 142 gagaacagcaatgagtcatttcattgtgtgacagatatatccctactctactatctcttg 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gagaacagcaatgagtcatttcattgtgtgacagatatatccctactctactatctcttg 401

                                                                       
Query: 202 ttttgcaaatctactatgtgtgtatattaaatttatttagggcagaatatttttatccaa 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ttttgcaaatctactatgtgtgtatattaaatttatttagggcagaatatttttatccaa 461

                                                                       
Query: 262 catgtacttgtagttatgtaaatccatctgtaaatcaaggagcacctctttctaaaaact 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 catgtacttgtagttatgtaaatccatctgtaaatcaaggagcacctctttctaaaaact 521

                                                                       
Query: 322 gtattcttagcctacaatgatgccagatcatgaaggaaataatgttatttaaatcagttc 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gtattcttagcctacaatgatgccagatcatgaaggaaataatgttatttaaatcagttc 581

                                                                       
Query: 382 accaaatgtgaaatgctttgaaaattctgtccactagtatttctaagcagtggtataact 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 accaaatgtgaaatgctttgaaaattctgtccactagtatttctaagcagtggtataact 641

                                                                       
Query: 442 atcaatgctattagttaactgaataaagtatttgaaaatggtgactctagcttgttaagt 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 atcaatgctattagttaactgaataaagtatttgaaaatggtgactctagcttgttaagt 701

                                                                       
Query: 502 atacaacaattagttttcaattgtcattgttttacaaaccaaaattaacagctttatact 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 atacaacaattagttttcaattgtcattgttttacaaaccaaaattaacagctttatact 761

                                                                       
Query: 562 tctactgaaagagtaaaatgttgttttatatacaatactttttaaaattttttattgttt 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tctactgaaagagtaaaatgttgttttatatacaatactttttaaaattttttattgttt 821

                                                       
Query: 622 tttaaacttatttttacactccatattccattccctgtccccat 665
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 tttaaacttatttttacactccatattccattccctgtccccat 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no482_a02.g1 MSMg01no482_a02.g1 CHROMAT_FILE:
MSMg01no482_a02.g1 PHD_FILE: MSMg01no482_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:49 2005
         (632 letters)



>mm_chrX_117988127_117989158
          Length = 1032

 Score = 1042 bits (539), Expect = 0.0
 Identities = 545/547 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttctgaaaacttttcttagggacttcatgcttcatcatgtgacttgctttgaggtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 actttctgaaaacttttcttagggacttcatgcttcatcatgtgacttgctttgaggtat 488

                                                                       
Query: 61  taattaggagaggcaatcatgaggagcatttgttccatctcagttattcttcctcatccc 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 487 taattaggagaggcaatcatgaggagcatttgttccatctcacttattcttcctcatccc 428

                                                                       
Query: 121 tggctttattggttcatatactttaataaaacatatgttggcctccatcattgaacacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tggctttattggttcatatactttaataaaacatatgttggcctccatcattgaacacag 368

                                                                       
Query: 181 cccccttctgtatacaggatttgcaaaactgacctaattagattccctagtggccaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cccccttctgtatacaggatttgcaaaactgacctaattagattccctagtggccaattt 308

                                                                       
Query: 241 ttccttttggttggaatcatgtcaaagaggagtcctaggatcatttgtaacaaagcagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttccttttggttggaatcatgtcaaagaggagtcctaggatcatttgtaacaaagcagct 248

                                                                       
Query: 301 tttttctagcaacactcttccaaggtatatcaatgatgtgggccattaaaaacaaaaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tttttctagcaacactcttccaaggtatatcaatgatgtgggccattaaaaacaaaaaca 188

                                                                       
Query: 361 tgaacaaaaacaaaaacaaaaaactgaactttcagaaagaacaagtatctagtatgcagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tgaacaaaaacaaaaacaaaaaactgaactttcagaaagaacaagtatctagtatgcagc 128

                                                                       
Query: 421 tcctttattaaaaaccaacccaaccaaataagcagcatttaatatagaatttctcatatg 480
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tactttattaaaaaccaacccaaccaaataagcagcatttaatatagaatttctcatatg 68

                                                                       
Query: 481 gaaatacatattctcctacctaaaattttgctcactgattactgtcgtcctaatttttat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  gaaatacatattctcctacctaaaattttgctcactgattactgtcgtcctaatttttat 8

                  
Query: 541 aattatg 547
           |||||||
Sbjct: 7   aattatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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