BAC Information

Click to search

BAC

Clone NameMSMg01-482C10
ChromosomeX (Build37)
Map Location 15,214,653 - 15,215,067
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668991, 4930403L05Rik
Downstream geneLOC100043949, LOC100043950, Cypt6, LOC100038939, LOC668993, Maoa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482C10.T7 (MSMg01no482_c10.b1)MSMg01-482C10.TJ (MSMg01no482_c10.g1)
ACCAG562389AG562390
length704741
length of high quality
(start - end)
593 (64 - 656)415 (126 - 540)
definitionCHROMAT_FILE: MSMg01no482_c10.b1 PHD_FILE: MSMg01no482_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:00 2005CHROMAT_FILE: MSMg01no482_c10.g1 PHD_FILE: MSMg01no482_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTTCGCTCTGAGCTCCATCTTTTAAGGGGGTTATTTGATTTTCTGAAGT
CCAGCCTCTTGAGTTCTTTATATATATTGGATATTAGTACCCTATCAGAT
TTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTT
ATTGACGGTGTCTTTTGCCTTGCAGAAGATTTGCAGTTTCATGAGGTCCA
ATTTGTCAATCCTCGATCTTACAGCACAAGCCATTGCTGTTATATTCAGG
AATTTTTTTTTTGTGCCCATATCTTAGAGGCTGTTCCCCACTTTCTCCTC
TATAAATTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACATAG
ATTTGACCTTAGTACAAGGAGATAGAAATGGATCATTTCGCATTCTTCGA
CATGACTGCCAGCTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTCTT
CCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGT
GTGGGTTCATTTCTGGGTCTTCGATTCTATTCCATTGGTCTACTTGTCTG
TCACCATACCAGTACCATGAAGTTTTTATCACAATTGCTCTGTAGTAAAG
CTTTAGTTCAGGAATGGTGATTCCACCAGAGGTACTTTTATCCTTGAGAA
GAGT
TTCTCGATGCAGTGGGAGGCCTGGCGGCCGCCCGGCTTCACAATGGGGGT
GACCNANANAAGGATTCGCGAAATGCTGAGCTGAACTGNGACTCTCAACA
TTGTGTATTCTAGGATGATTATGGCTGACAGTTCTCAACGCCACTTTCCC
CGGAGCTTTAATGCTGTTATCCATACAGGGAAGTAGACTATTCGAAAGTG
CATATTTGTGGAACATTTCATTATAACTGTGCTTCTTCACAGGCAGGTAG
TTTCTTTGGAAATGTAGCATGTGCATAATCCTCTTTATGAATTACAAGCA
ATTACTGGCTTCCATGCTTGATTGGTTTTAACTGCTTCATTCCAATTAAA
TTTGGCAGGATAAATATTTGAGAGGGAAAGGTGTGTGGTTTCACAGGTAA
ACTATGAACATTGCTTCCCCCCAAGTTTATGGCGTACAAACTGCTTTTCA
TGTTGCCAGAATTCATAGTGCTTCCCTGAGCCTTCATCAAGTAAATGTTA
TTCCTCATATTAAGTCTTTCAAAAAAAAGTCTTTAACCAGCTTTTTAGAA
TTTCACTGCCTGATTGTTTCTATATAATGCATTTGGCAGGAGAGTTTCTC
ACAGAATATCACATATTTAGACTCAGCTAACCTTAAATATCTTGCATTTA
GAAATCTATATTTAGATCCCAGCTATTTGCTTTTAATTTCTAATCCATAA
GCACACTTTTTAATGAACTTTTGCAACATATACCTAAAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_c10.g1 MSMg01no482_c10.g1 CHROMAT_FILE:
MSMg01no482_c10.g1 PHD_FILE: MSMg01no482_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:00 2005
         (415 letters)



>mm_chrX_15214453_15215267
          Length = 815

 Score =  748 bits (387), Expect = 0.0
 Identities = 408/419 (97%), Gaps = 8/419 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgacagttctcaacgccactttccccggagctttaatgctgttatccatacagggaagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tgacagttctcaacgccactttccccggagctttaatgctgttatccatacagggaagta 556

                                                                       
Query: 61  gactattcgaaagtgcatatttgtggaacatttcattataactgtgcttcttcacaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gactattcgaaagtgcatatttgtggaacatttcattataactgtgcttcttcacaggca 496

                                                                       
Query: 121 ggtagtttctttggaaatgtagcatgtgcataatcctctttatgaattacaagcaattac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ggtagtttctttggaaatgtagcatgtgcataatcctctttatgaattacaagcaattac 436

                                                                       
Query: 181 tggcttccatgcttgattggttttaactgcttcattccaattaaatttggcaggataaat 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tggcttccatgcttgaatggttttaactgcttcattccaattaaatttggcaggataaat 376

                                                                       
Query: 241 atttgagagggaaaggtgtgtggtttcacaggtaaactatgaacattgc----ttccccc 296
           |||||||||||||||||||||||||||||||||||||||||||||||||    ||    |
Sbjct: 375 atttgagagggaaaggtgtgtggtttcacaggtaaactatgaacattgcctcttt----c 320

                                                                       
Query: 297 caagtttatggcgtacaaactgcttttcatgttgccagaattcatagtgcttccctgagc 356
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 taagtttatggcgtacaaactgcttttcatgttgccagaattcatagtgcttccctgagc 260

                                                                      
Query: 357 cttcatcaagtaaatgttattcctcatattaagtctttcaaaaaaaagtctttaaccag 415
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 259 cttcatcaagtaaatgttattcttcatattaagtctttcaaaaaaaagtctttaaccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)