BAC Information

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BAC

Clone NameMSMg01-483D16
ChromosomeX (Build37)
Map Location 42,693,611 - 42,693,853
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr40c, Wdr40b, LOC665585, 1110059M19Rik
Downstream geneLOC100040038, EG385346, LOC100040075, Actrt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483D16.T7 (MSMg01no483_d16.b1)MSMg01-483D16.TJ (MSMg01no483_d16.g1)
ACCAG563206AG563207
length781789
length of high quality
(start - end)		609 (50 - 658)245 (75 - 319)
definitionCHROMAT_FILE: MSMg01no483_d16.b1 PHD_FILE: MSMg01no483_d16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:22 2005CHROMAT_FILE: MSMg01no483_d16.g1 PHD_FILE: MSMg01no483_d16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGTGTTATTTG
ATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGT
CCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGG
TCTTTTTGACTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTT
TCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCT
GTTCTGTTCAGGAATTTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCC
CACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCT
TGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATT
CGCATTCTTCTACACGATAACAACCAATTGTGCCAGCACCAATTGTTGAA
AATGCGGTCTTTCTTCCACTGGATGGTTTTCGCTCCCTTGTTGAAGATGA
AGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCAT
TGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAAT
TGCTCTGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCACCAGAAGTTC
TTTTATCCTTGAGGAGATTTTTTGCTATCCTANGNTTTTGTTATTTCAGA
ANGAATTGCAAATTGCTCCTTCAATTCGTTN

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGTGGGGCAGGCCAGCGTGTAAATG
GAGACAGTTGTGTGGGTTTGGGGGTAATAAAAGAGGAAGAGGCAGGGGCA
GTGGGAAGAGAGACAGAAGACTAGGGGGGGGGTTAAGGGGGAGAAGGCTG
GGCCTTAGCCTGTATCTCAGAAGAGAGGGGAGAAGCAGATTGGTATCTTG
GATGGGGTGGGAGGGCCAAAGACTCGGGCAGCTCAATCATGATGGATGAC
TCAGGGTCCAAATCCCCATATTTTTTAGGATTTGCGGGTGCTGTAACCCT
GGCCAACATGATTTGGGCTGCTGAGCATAGACTACTGAGGGAGGGGCCGG
GGTGAAATTCCCACCCCCCCTGAATACAAGGGTGCTCACTCCTTTTTCTC
TTATGCCACCGCAATTGTCTTGGTCACGGAGAACTTCAAGATCTAGAGTG
CCCTCTGGTGGCCACTTAGATTGGTCGTCTACCTTATTTTGGAGCCTCGC
CTCTCCATCCACCTTCATCTGCCCTTTTCGAATCAATTTTTCACACCCCC
CCTTTTTTCCCCCTTTTCCTATCTTATATTCTTCTAGTCCTCCTGCCGCT
TTCCTTTTTATCCCTATTGTCCCCCTCCTTCCCCTTTTTTTCGCTGTCTC
TTCTCCACTTTTGTTATTTTCTTCCCCCTCTATACTCTTATTACCTCTCC
TATATTCTCGCCACCTGCCCTCTTCCTTCTTTTTACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_d16.g1 MSMg01no483_d16.g1 CHROMAT_FILE:
MSMg01no483_d16.g1 PHD_FILE: MSMg01no483_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:22 2005
         (245 letters)



>mm_chrX_42693411_42694054
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%), Gaps = 1/244 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtggggcaggccagcgtgtaaatggagacagttgtgtgggtttgggggtaataaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtggggcaggccagcgtgtaaatggagacagttgtgtgggtttgggggtaataaaaga 260

                                                                       
Query: 61  ggaagaggcaggggcagtgggaagagagacagaagactagggggggggttaagggggaga 120
           ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| 
Sbjct: 261 ggaagaggcaggggcagtgggaagagagacagaagacta-ggggtgggttaagggggagg 319

                                                                       
Query: 121 aggctgggccttagcctgtatctcagaagagaggggagaagcagattggtatcttggatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aggctgggccttagcctgtatctcagaagagaggggagaagcagattggtatcttggatg 379

                                                                       
Query: 181 gggtgggagggccaaagactcgggcagctcaatcatgatggatgactcagggtccaaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gggtgggagggccaaagactcgggcagctcaatcatgatggatgactcagggtccaaatc 439

               
Query: 241 ccca 244
           ||||
Sbjct: 440 ccca 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 644
Length adjustment: 9
Effective length of query: 236
Effective length of database: 635
Effective search space:   149860
Effective search space used:   149860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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