NNNAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTAATATCTCCCATTTGGTTTAGTAGAGAGCCAATTTCCT
ATCTCTGTTGTTTCATGGGTACAGTGGTTGGTAATTGTTTCCATATTGGT
GGGCTCTATCTCTGGTCAGTAAGGAATGGTTGGCAGGTTTGTTAACTTTT
ATCCTGTAGACCCAGGATTATCTCTGAGGAGAAGAGGTGAGCTCAGCATT
TGGCAGTGGAATTTTCCAGGGATAGAGCTCCTGGGAGTTAGGTCAAAGGG
TGAACCAGTTGCCAAAGCAGATGATATGAGTACAGAGAGGCCAGCTGTGG
AAGTCAGTCCACATCAGGTTGTATATCCATTTACTCGGGTCCATTACAAC
TAACCTTTTGCCTCCACGCTGCTCTCATCTTGGATACCAAGAAGAGAGGG
GTGGGAAGAAGAGTGGCTAGAAGCTATTTATTCAATGCAGGTGAAAGCAC
AGATGGGGAAGGTGAGTGCTTTCAGCGAGAGAGTGCAGAGCAAGCTGCAG
AGAGGGAGCAAATATCAGGATGTTTTGACAGTTGGAGAGGGCTTTGGGCG
GATGTCTCTCCTACCAAGGCTCAGAGAAAGCCTGTGTCAGGAGGAGTCAA
CATTGTAATCTCGGTTACTTTCATTTANGAGGCTGATTGGAATCTGCGCC
AATCCTGGACTTAATTTGTGCTTTTTGCTTCCAAGCTTTTTGCCTCATAT
GTAAACTTGGACCTTTGCAAGCN

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACCAGGAACTACAAAGGCAAGTTT
CACCAACAGAATATAATTGATAGAAGAAAGAATCACAGAAGTTGAAGATA
AAACGAACTAAATGGATTCATGAGTAAAAGAAAATGTTAAATTAAAATAA
CTTCTGATAAAACAGCCACAAATCTGGGGCACTGTGAAAAGACCAAATCA
AAGAATAATAGGAATCAAGGAAGGAGCAGGAACCCAGGTCAAAAGCCCAA
AAATATTTTCAACAAAATCCTAGCTTTTTCTAACCTAACTAAGGAGATGC
CTATAAAGGGACAAGAATACAGAATACCAAATAGATTGGACCAGAAAAGA
AAGTCCCATTGGCCATAATGATCAAAACTCTAAACGAACAGAGCAAAAAA
AAATATTAAAAGCTCCAAAGGAAAAAGAGCAAGTAACATATAAGAATTAT
AACTGACTTCTCAATGGAAACTTTAAAAACCAGAAGGGTCTGCAAAGATT
TGCTGCAGATTCTAAGAGATCACAGATGCCAGCTCAGACTACAATATCCA
AAAACTTCCATTCACCATAGACAGAGAAGATAAGATATTCCATGATAAAT
CCAAATTTAAACATATTTATCTACAAATCCAACTCTGCAGAAGGTGATAG
AAAGAAATCTCCAACCTAAGGAGGTTAATTGCAACCATGAAATCACAGGG
AATAAATAATCTCCCACCAGCAACCTA

Query= MSMg01no484_g20.b1 MSMg01no484_g20.b1 CHROMAT_FILE:
MSMg01no484_g20.b1 PHD_FILE: MSMg01no484_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:59 2005
         (576 letters)



>mm_chrX_46028030_46029005
          Length = 976

 Score = 1060 bits (548), Expect = 0.0
 Identities = 566/572 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaatatctcccatttggtttagtagagagccaatttcctatctctgttgtttc 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaatagctaccatttggtttagtagagagccaatttcctatctctgttgtttc 264

                                                                       
Query: 65  atgggtacagtggttggtaattgtttccatattggtgggctctatctctggtcagtaagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgggtacagtggttggtaattgtttccatattggtgggctctatctctggtcagtaagg 324

                                                                       
Query: 125 aatggttggcaggtttgttaacttttatcctgtagacccaggattatctctgaggagaag 184
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 aatggttggcaggtttgttaacttttatcctgtagacccagggttatctctgaggagaag 384

                                                                       
Query: 185 aggtgagctcagcatttggcagtggaattttccagggatagagctcctgggagttaggtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggtgagctcagcatttggcagtggaattttccagggatagagctcctgggagttaggtc 444

                                                                       
Query: 245 aaagggtgaaccagttgccaaagcagatgatatgagtacagagaggccagctgtggaagt 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 aaagggtgaaccagttgccaaagcagatgagatgagtacagagaggccagctgtggaagt 504

                                                                       
Query: 305 cagtccacatcaggttgtatatccatttactcgggtccattacaactaaccttttgcctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagtccacatcaggttgtatatccatttactcgggtccattacaactaaccttttgcctc 564

                                                                       
Query: 365 cacgctgctctcatcttggataccaagaagagaggggtgggaagaagagtggctagaagc 424
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cccgctgctctcatcttggataccaagaagagaggggtgggaagaagagtggctagaagc 624

                                                                       
Query: 425 tatttattcaatgcaggtgaaagcacagatggggaaggtgagtgctttcagcgagagagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 625 tatttattcaatgcaggtgaaagcacagatggggaaggtgagtgctttcagcgagagagc 684

                                                                       
Query: 485 gcagagcaagctgcagagagggagcaaatatcaggatgttttgacagttggagagggctt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcagagcaagctgcagagagggagcaaatatcaggatgttttgacagttggagagggctt 744

                                           
Query: 545 tgggcggatgtctctcctaccaaggctcagag 576
           ||||||||||||||||||||||||||||||||
Sbjct: 745 tgggcggatgtctctcctaccaaggctcagag 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)