BAC Information

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BAC

Clone NameMSMg01-484K14
ChromosomeX (Build37)
Map Location 160,582,502 - 160,583,138
singlet/doubletsinglet
Overlap geneAce2
Upstream geneLOC100040610, EG637051, Grpr, 1700045I19Rik, Ap1s2, Zrsr2, Car5b, Siah1b, Tmem27
Downstream geneBmx, Pir, Figf, Piga, Asb11, Asb9, Mospd2, Fancb, LOC627045, Glra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484K14.T7 (MSMg01no484_k14.b1)MSMg01-484K14.TJ (MSMg01no484_k14.g1)
ACCAG564294AG564295
length1,124750
length of high quality
(start - end)
---637 (79 - 715)
definitionCHROMAT_FILE: MSMg01no484_k14.b1 PHD_FILE: MSMg01no484_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:18 2005CHROMAT_FILE: MSMg01no484_k14.g1 PHD_FILE: MSMg01no484_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCTGGGTGTTGTGGGGCGCCTGTCCCGTGGGGGCTATTTTCTCCGAGAG
GTTTAGTTGTGGATCCGGTTGTCTTGTCCCCGACGGGATTCCGTGTATCT
TTTCCTTGTGGGCGTGGCGTGGGGACGCGAGTATACTTCCACTGATGGGA
TTCTACCCCTGCTGGGGTGCCGAATGTCAAGATACCTCACACTTTCGCGG
CGGGTCCCGACGCCTATGTCTCATTACCCTTCCCCATGCGAACACGGTCC
TGTAATATATATATGAGTCGCCGCCGTTTTGCTCCCCTTTTCCCTGTAGG
TCCCATGTCTTTCCCGATAATTAGGGGGGGTCGATGGGTGACCCGCGAAT
GGGCGTAATTGATTGCTTCTACGCCCCCCACCCCCACCCCCACATCACCT
CTAATTTATTAGTGATTTCGAAGCGTACTGAGTTGTGTCTCCCCGCCCCT
CTGGTGTGTACGCGAGAAGCCGATAGGAGGGACGGAGAATGCGGCCGGGG
GTGTGGGCGTTTGGGGGGGGGTGGGGGTTGGCAGCATCCCCCCCGTTTTT
ATAGCCCGCGCTTACACGATCAAACACGTGATCGAATGCGTTGTTTAGAG
GACNGCGTGTGTCACAGGCCGTTGGACCTAGGAACGGAGGTGTGCATTAT
GTGTGGATTGTATCTTGAGAGCTTATAGTGGAAGGAGTGCGGTGTGTCTA
CCGGGGCGGTACGTTTTAGCGTTGTTCTTTGCGCTCGCCGCTGTATTCCT
GCGCGCCCCCGCTACTCGTCGCCTGGTTGTCTGGGAATAGAAATGGTGGC
GGGCGGTTTGCACCGTATGTTTGTTAATGTTTATATTGCTTACTCGCCCG
CGCGCGCGTGCGTTATGTGTTCGACGCTGCTACGTCGCCCTCGTATCTAG
GTGGCTCGCGTAGTGACGGGGTGGTCTCCTCTTGCACTACGTATTTATCC
CCGCTCCGCCAGCCGTCTCTTTATTCAACCCTCTTCCGCGCGCTATNGTG
AAATGTATTTGCGAGGCGCGGCGCTCGGAGTCGATGTTTCGCCATATCGC
GCGCGCCNTTCGTTATGTATGTAGCGCCCTGTGCGCGGATGTACGATGCC
GCGCGGCCGACTCGCGGCGGGGCN
NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGTCAAGAATTAAGAAATAT
CAACCTTTGTCTGTATATTTTCACAGTAAGCCTTTACTGGGCAAAGGGGA
GAATGTGTCCCCATAAATTTGCATTATAGTGACCTTACTCAGTTTTATTG
TGGATCAACACTTGTTCTTAGATATGCACTGAGTTGCAGAATTAGACTGT
GAGTTTGCTTGAATAAGATTATCTGAGGATCCAGTTTATCTTTTCGGGAG
TTAATGGAAAATGAACTTCTTGAATAGATAAAAGAAATAGTTCTGGAATT
CCCAGAGTTTAATATGTGCTCAGCAGTAACTGGCCCGTAACTGAAAACAA
GTGAAAGACTTGCAATTACCACTGATGCATTTGAGGTCGTTAGGTTTTTC
TGATCTTAGTTTCATGATGCATTTATTGCTTTAGGGAGAGTATACAAGTT
TTGAAAAAAGTTCTCCCATGAAATAAATATTTACAAGATGCCCAAAGAAA
GTTTATAGATCACTAGCACATTGGCAAGTATTTGATAAGACTAATCCTAA
CTGTAACAAAAACATTTACCACCAAAAGTTGTCATATATTATGGAAAGAC
AGAAATTGAAATTAGGCTGGAAAATACAAATTGTGTATAAGTTAGTTCTT
CTAGGGAGCAACTGAGGCATAAGAAATAGTTTCTGATCAGAAGAGAGCCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_k14.g1 MSMg01no484_k14.g1 CHROMAT_FILE:
MSMg01no484_k14.g1 PHD_FILE: MSMg01no484_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:19 2005
         (637 letters)



>mm_chrX_160582302_160583338
          Length = 1037

 Score = 1224 bits (633), Expect = 0.0
 Identities = 636/637 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggtcaagaattaagaaatatcaacctttgtctgtatattttcacagtaagcctttact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggtcaagaattaagaaatatcaacctttgtctgtatattttcacagtaagcctttact 260

                                                                       
Query: 61  gggcaaaggggagaatgtgtccccataaatttgcattatagtgaccttactcagttttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggcaaaggggagaatgtgtccccataaatttgcattatagtgaccttactcagttttat 320

                                                                       
Query: 121 tgtggatcaacacttgttcttagatatgcactgagttgcagaattagactgtgagtttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtggatcaacacttgttcttagatatgcactgagttgcagaattagactgtgagtttgc 380

                                                                       
Query: 181 ttgaataagattatctgaggatccagtttatcttttcgggagttaatggaaaatgaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaataagattatctgaggatccagtttatcttttcgggagttaatggaaaatgaactt 440

                                                                       
Query: 241 cttgaatagataaaagaaatagttctggaattcccagagtttaatatgtgctcagcagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgaatagataaaagaaatagttctggaattcccagagtttaatatgtgctcagcagta 500

                                                                       
Query: 301 actggcccgtaactgaaaacaagtgaaagacttgcaattaccactgatgcatttgaggtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actggcccgtaactgaaaacaagtgaaagacttgcaattaccactgatgcatttgaggtc 560

                                                                       
Query: 361 gttaggtttttctgatcttagtttcatgatgcatttattgctttagggagagtatacaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttaggtttttctgatcttagtttcatgatgcatttattgctttagggagagtatacaag 620

                                                                       
Query: 421 ttttgaaaaaagttctcccatgaaataaatatttacaagatgcccaaagaaagtttatag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttgaaaaaagttctcccatgaaataaatatttacaagatgcccaaagaaagtttatag 680

                                                                       
Query: 481 atcactagcacattggcaagtatttgataagactaatcctaactgtaacaaaaacattta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcactagcacattggcaagtatttgataagactaatcctaactgtaacaaaaacattta 740

                                                                       
Query: 541 ccaccaaaagttgtcatatattatggaaagacagaaattgaaattaggctggaaaataca 600
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 741 ccaccaaaagttgtcatatattatggaaagacataaattgaaattaggctggaaaataca 800

                                                
Query: 601 aattgtgtataagttagttcttctagggagcaactga 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 801 aattgtgtataagttagttcttctagggagcaactga 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)