BAC Information

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BAC

Clone NameMSMg01-485E01
ChromosomeX (Build37)
Map Location 132,600,684 - 132,601,317
singlet/doubletsinglet
Overlap geneBex2
Upstream geneEG621246, LOC100040635, Tceal6, EG621322, Pramel3, EG621352, EG331529, EG621380, EG666040, EG666045, AV320801, EG621467, Nxf7, 4930534P07Rik, 1700008I05Rik, 1700129I15Rik, Gprasp1, Gprasp2, Bhlhb9, LOC100041110, 2900062L11Rik, 6530401D17Rik
Downstream geneNxf3, Bex4, Tceal8, Tceal5, Bex1, LOC100040972, Wbp5, Ngfrap1, LOC666180, LOC237048, LOC666196, Kir3dl2, LOC100041079, Kir3dl1, Tceal3, Tceal1, Morf4l2, BC065397, Glra4, LOC100041122, Plp1, Rab9b, 1700014N06Rik, LOC621984, LOC100034363, 4930488E11Rik, LOC666244, 2810402A17Rik, Zcchc18, BC031748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485E01.T7 (MSMg01no485_e01.b1)MSMg01-485E01.TJ (MSMg01no485_e01.g1)
ACCAG564742AG564743
length739743
length of high quality
(start - end)		546 (54 - 599)634 (80 - 713)
definitionCHROMAT_FILE: MSMg01no485_e01.b1 PHD_FILE: MSMg01no485_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:08 2005CHROMAT_FILE: MSMg01no485_e01.g1 PHD_FILE: MSMg01no485_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:08 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GGGGCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAAGGGCGTGCAGGTGGGAGGGGAAGCATCCTCATAGA
AGCAGGGGGAGGGAGGTTGGGATAGGGGACTTCTGAGGGGGTGGGAAAGG
GGATAACACTTGAAATAAAAATAAAAATATCCAATAATAAAGAGATGACT
TAGCTCTACCTGAGGATGCAGCTCTAATTCCCAGGGGTGGCTCCCAACCA
TCAGTAACTAGTCTGGGGCAGTCTGATAACTTCTGGGCACCAGGCACACA
TGTGGTACACAGACGCATGCAGCCAAAACACTTGTGCATGAAATCTTATT
AAATTTTTAAAATTAATTATTTTACTTATTTATATTCTAGCTTTTCTCCC
CCTTCCTGGTTCCCCCCACACACACAGTTCCTCACCCCATTCCCTTGCCT
TCTAGAGGGTGCTCCCTCTCTGTCCCCTCCTCCCTCTTCCCTAGGTCCTC
AGGTCTCAGGATTAGGTGCATCTGCTCCCACTGAGGCCCAACCAGGCAGT
CCTCTGTTACATGTGCCTGGGGCCTTGGATCAGCCAGGTGTTTGCTGCCT
GGTTGGTGACTCACTTTCTAGGATTTCCCCCCTGGGTCCCAGTTAATTGA
GACTGCTGATCTTCCTATGGGGTTGCCCTCCCCTTTAGCTCCTTTAAATT
TTCCCCTAATTCCTCCAAAGTGGGCTCTGACTTCAGTCG

TTTTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGAACAGAAACAATGTAAA
GGTGATGGTTACCAGGGGAGGGACGGGAAAACACACTGTTCTTTGTTTGG
ATATGAGAGTCTGTGCACCATGACACAGAAGCAAAGCCTCAGGTGAGGGA
TTGAACGGGATCTGGGATCTCTAGCTCCCTTGTATCAGGAGGGCTGTGTG
TATACTGCACACAGGTGAAAGGAATAAGATGAAAAGTGTATTATTACACC
ATGGGGAAGTGTGCTTAACCAAAACCAAACAGGGGCCCCGAGTTATTAAA
ATGTTCCCTATGTTATCTGCCTGAGTTCCAGAGAATGAGGCCCAGCAGTA
ATCACGTGACAATTTCATTCCATCACTTTTCCCTTTGTGTATGGCATATA
TAGTATATATACACGTGTGTATATGTAGCCTTTAAAGAACTACTAAGATA
GCCTTTTAAATCTGCTTTATTAGGTTCACAATATATACTGAGCATCTTCC
CATGCAATAGATAAATTCTGCTAACAAAAAAAGAAATGTAAGACTGAGTC
GAAAACACAAGTTTCAATTAGAAGCTGGCAGAAGTTGGAGCCCCATGGGG
AAACAAGTGACACCAGAAATATTACAACAGTACATCACAAACATGTAAGT
TTTGAAAGCAGGGGTCCCCATGTCATCTTCAGAGAAAAGCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_e01.g1 MSMg01no485_e01.g1 CHROMAT_FILE:
MSMg01no485_e01.g1 PHD_FILE: MSMg01no485_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:08 2005
         (634 letters)



>mm_chrX_132600484_132601517
          Length = 1034

 Score = 1210 bits (626), Expect = 0.0
 Identities = 632/634 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgaacagaaacaatgtaaaggtgatggttaccaggggagggacgggaaaacacactgt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 attgaacagaaacaatgtaaaggtgatcgttaccaggggagggacgggaaaacacactgt 260

                                                                       
Query: 61  tctttgtttggatatgagagtctgtgcaccatgacacagaagcaaagcctcaggtgaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttgtttggatatgagagtctgtgcaccatgacacagaagcaaagcctcaggtgaggg 320

                                                                       
Query: 121 attgaacgggatctgggatctctagctcccttgtatcaggagggctgtgtgtatactgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgaacgggatctgggatctctagctcccttgtatcaggagggctgtgtgtatactgca 380

                                                                       
Query: 181 cacaggtgaaaggaataagatgaaaagtgtattattacaccatggggaagtgtgcttaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacaggtgaaaggaataagatgaaaagtgtattattacaccatggggaagtgtgcttaac 440

                                                                       
Query: 241 caaaaccaaacaggggccccgagttattaaaatgttccctatgttatctgcctgagttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaaaccaaacaggggccccgagttattaaaatgttccctatgttatctgcctgagttcc 500

                                                                       
Query: 301 agagaatgaggcccagcagtaatcacgtgacaatttcattccatcacttttccctttgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagaatgaggcccagcagtaatcacgtgacaatttcattccatcacttttccctttgtg 560

                                                                       
Query: 361 tatggcatatatagtatatatacacgtgtgtatatgtagcctttaaagaactactaagat 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatggcatatatagcatatatacacgtgtgtatatgtagcctttaaagaactactaagat 620

                                                                       
Query: 421 agccttttaaatctgctttattaggttcacaatatatactgagcatcttcccatgcaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agccttttaaatctgctttattaggttcacaatatatactgagcatcttcccatgcaata 680

                                                                       
Query: 481 gataaattctgctaacaaaaaaagaaatgtaagactgagtcgaaaacacaagtttcaatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gataaattctgctaacaaaaaaagaaatgtaagactgagtcgaaaacacaagtttcaatt 740

                                                                       
Query: 541 agaagctggcagaagttggagccccatggggaaacaagtgacaccagaaatattacaaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agaagctggcagaagttggagccccatggggaaacaagtgacaccagaaatattacaaca 800

                                             
Query: 601 gtacatcacaaacatgtaagttttgaaagcaggg 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 801 gtacatcacaaacatgtaagttttgaaagcaggg 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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