BAC Information

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BAC

Clone NameMSMg01-485O15
ChromosomeX (Build37)
Map Location 6,926,894 - 6,927,277
singlet/doubletsinglet
Overlap genenone
Upstream geneShroom4, LOC100043937, Dgkk, Ccnb3, Akap4, Clcn5
Downstream geneUsp27x, 2010204K13Rik, LOC668973, Ppp1r3f, 4930524L23Rik, Foxp3, Ccdc22, Cacna1f, Syp, LOC632264, Lmo6, Plp2, Pdzx, Ppia-psx_14.1, Gpkow, LOC100043938, Wdr45, Praf2, Ccdc120, EG236622, Tcfe3, Gripap1, LOC100043939, Kcnd1, Otud5, Pim2, Slc35a2, Pqbp1, Timm17b, Pcsk1n, Eras, Hdac6, LOC668974, Gata1, Glod5, LOC668975, EG627737, EG632013, Suv39h1, Was, EG627782, Wdr13, Rbm3, Tbc1d25, Ebp, Porcn, Ftsj1, Slc38a5, Ssxb10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485O15.T7 (MSMg01no485_o15.b1)MSMg01-485O15.TJ (MSMg01no485_o15.g1)
ACCAG565246AG565247
length724723
length of high quality
(start - end)		339 (333 - 671)385 (85 - 469)
definitionCHROMAT_FILE: MSMg01no485_o15.b1 PHD_FILE: MSMg01no485_o15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:03 2005CHROMAT_FILE: MSMg01no485_o15.g1 PHD_FILE: MSMg01no485_o15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGA
GGCGCGGAATTCCCATTGCTACCAAAAATATCCAGCCAACACTGGGGAAG
CCCAGATGCCTAATGGATAGCAAAAGAACACAATCAACAAGACCCAGAAC
AATATGGCACCACTGGAGCCCAACTATCCTGCTACAACAGACCCTGGATT
TCCTAATGAAACTGAAGCACAGGAAGAGGATCTTAAATTCAACCTTATAA
AGATGACTGAGAACTTAAAAGGGACATGAATGAACTCCCAAAGGAAATAC
TGGAAAATGCATTCAAAGAGGTATTTTTTTTTGAAAGAGGAAGCAAATAG
ATATAAAGAAATACAGGTAAATTCAATCAAGCAGGTGAAGCATATGAATA
AAGCTTCCCAAGACCTGAAAAGGGAAATACAAGCAATAAAGAAAATACAA
ACTGAGGCAATCCTGGAGATGGAAAACCTAGGAAAGAAAACAGGAACAAC
AGATGCAAGCATCACCAACAGAATACAGGAGATGGAAGCGAGAATCTCAG
GTGTAGAAGATACTAAAAAAGAAATCAATATTATCAGTCAAAGAAAATGC
AAAATCTAAAAAGTCCATGACATANAACATCCAGGAAATCTGGAACACTT
AAAAAAAGGACCAAACCTAAGAATAATGGGAATTGAAGAGGAGGAGGAAT
AGAATGAGACGAAGATCCCAGTTT

TTTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGAAAATGAGGACA
CAACATACCCAAACTTATGGGACACAATGAAAGCAGTGCTGAGAGGAAAA
TTCATAGCACTAAGTGCCCCTTCCCCTCCCAACTTTGTTGTTTTGTTTTG
TCATGTCATGGTGTTTCATTGCAGCAATAGAAACTCTAAAATATCCCTCT
TTCCTCCTCTATATCTTTCCCTCCCTCTTTCCCTTCCCCCCTTTCCACAA
CTCTTCATCAGCCATACCACACATACCCTATGAGTCTAATGACTTTATTT
TTCTTTCTTTTTCCAGATTTATTCAAGTGTGGATAACATGATTTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGANNGNNNNNNNNNNNNNNNNNGNNGGGGN
GAGGGGAGAGGGGGNAGNGAAAGGAAAGGGAAGAGAGAGNAAAAGAAGAG
AAAGGGAAAGAGGAGAAAAAGGAAAAGAAAAGGGGGAGAAGGGGGAGAGA
AGAGGAGAAGGAAAAAAGAGGGAGAAGAAAGGAGAGAAAGGAAGNAAAAG
GAGAGGAAAGATAAAAAAAGGAAGAGAAGAGGGGGGAGGTGGGAAAGGGA
GATTTGTTATTTATATGTTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_o15.g1 MSMg01no485_o15.g1 CHROMAT_FILE:
MSMg01no485_o15.g1 PHD_FILE: MSMg01no485_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:03 2005
         (385 letters)



>mm_chrX_6926694_6927477
          Length = 784

 Score =  659 bits (341), Expect = 0.0
 Identities = 374/385 (97%), Gaps = 1/385 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgaaaatgaggacacaacatacccaaacttatgggacacaatgaaagcagtgctgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgaaaatgaggacacaacatacccaaacttatgggacacaatgaaagcagtgctgaga 260

                                                                       
Query: 61  ggaaaattcatagcactaagtgccccttcccctcccaactttgttgttttgttttgtcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaaattcatagcactaagtgccccttcccctcccaactttgttgttttgttttgtcat 320

                                                                       
Query: 121 gtcatggtgtttcattgcagcaatagaaactctaaaatatccctctttcctcctctatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcatggtgtttcattgcagcaatagaaactctaaaatatccctctttcctcctctatat 380

                                                                       
Query: 181 ctttccctccctctttcccttcccccctttccacaactcttcatcagccataccacacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttccctccctctttcccttcccccctttccacaactcttcatcagccataccacacat 440

                                                                       
Query: 241 accctatgagtctaatgactttatttttctttctttttccagatttattcaagtgtggat 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accctatgagtctaatgactt-atttttctttctttttccagatttattcaagtgtggat 499

                                                                       
Query: 301 aacatgatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagaga 360
           ||||||||||||||||||||||||||||| | | | | | | ||||| ||| ||||| ||
Sbjct: 500 aacatgatttgtgtgtgtgtgtgtgtgtgagagagagagagagagagggagggagaggga 559

                                    
Query: 361 gagagagagagagagagagagagag 385
           |||||||||||||||||||||||||
Sbjct: 560 gagagagagagagagagagagagag 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 41
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 784
Length adjustment: 9
Effective length of query: 376
Effective length of database: 775
Effective search space:   291400
Effective search space used:   291400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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