BAC Information

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BAC

Clone NameMSMg01-486E06
ChromosomeX (Build37)
Map Location 60,360,409 - 60,390,354
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC385367, LOC671741, 4933402E13Rik, 4931400O07Rik, 1700019B21Rik, LOC671878, LOC666695, EG627420
Downstream geneLOC666729
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486E06.T7 (MSMg01no486_e06.b1)MSMg01-486E06.TJ (MSMg01no486_e06.g1)
ACCAG565509AG565510
length739747
length of high quality
(start - end)		622 (53 - 674)669 (79 - 747)
definitionCHROMAT_FILE: MSMg01no486_e06.b1 PHD_FILE: MSMg01no486_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:31 2005CHROMAT_FILE: MSMg01no486_e06.g1 PHD_FILE: MSMg01no486_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,389,775 - 60,390,354)(60,360,409 - 60,361,077)
sequence
ATGGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTAACTGATTCACATCTGGACATGCTCACCGAAAAAAA
AAAAAACCTCACCAAGCTGTGAAGCACAGCCTGTAGCCATTATGGATGAA
GAAAATGCTTAGAATAGCCCTATGGCTTGTCATCTGTTCTACTGTGAGAA
CTAACTAGGAACCCCACCTAACAATAAGGATTAGTTCATGACTGATATAA
CCTTAACATCTAGCTGGCAAGTTCACTCAACTGTACCACATACTGGACAT
CTCAAATGGACAAGGACCCTTTCCAATTAAAAGAAATAATTTACATTACC
AATCTAGAAAGAGACTAAGTTTACAACCCCAGCTAAACACAAAATTTAGA
CATTTATAAACCTTCAGAGGAGCATTCTCATATTCTAAGATATAAAACTT
AATAGTGTTGTTGAGTCAAGACCTTAGGGTTAGCTGAATGTATACTCTAA
TAAATGATACCATCAATAAGAATACAAACTGCAACCCCATATGACAACAC
AGATCTTCATTATTTTTATTGTCACTATTACATAATAAATAAATGCACAG
TTAAGAGAGAAGAGAATATTTTATCTCAATAAAAATTATGTGTATTTGTG
TGTGTGTGTGTGTGTGTGTGTGTNNNNNNNNNGTTGTTTTCCATGTGGGG
TGCGTGTGCATGCACATTTGCAGGACAAAGGAGGGCATC

NGTCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGCAAACTTGAATATATA
ACAATTAAAGGTGCAAGTAGGTGTCTTGAACTACCACTGGTGATTAGCAA
GTCCCTTAATATTAGGTCATATAAATCTTGATATTCTTATATAAAATGAG
ATATATTGTGTAAAATCTTCCATTTATATACATTTATCAATACTGTATAA
ATGCAAATGAGCTAATTTGTATTCAGAATCAGGTAGGCAGAAACATCTAT
AGTGTGTATGCTAAGTGGGATTCTAATTCAGCTCCCATTTTCCCCCTCTC
TGAATTTGTCAGTGAAACAGTTACCAATTTTTCTATACTTATTTATTTTC
AGCATAAAATGGAAGCTGGCAGGAAAGTTTAGGCAAACTTCAGACACAGG
GTAGCAAATTTCATCCAAATACATAGCAGAAATAGGGGCTTATTCCTCTG
TCCTCAAGTAATGTGTTAGCCTTAAGATGAATAATCTGGGAAGTGATTTC
TTCTGTTTAATTCTCTATGAAACATGCTATATGCAGTGGAAGGTGTGAAG
CAGAAGACTGAATAGATACCTCTTGTACTAGTGACATAGAGAGCTCGGAC
ATAACTTACTAGGATAGTTTTAAATCACAAAGATAGTAAAAATTATTTTG
TAAAATAAAATTAACCTGCTGTAGAATTTATTTTCAGATGACATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_e06.b1 MSMg01no486_e06.b1 CHROMAT_FILE:
MSMg01no486_e06.b1 PHD_FILE: MSMg01no486_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:31 2005
         (622 letters)



>mm_chrX_60389569_60390590
          Length = 1022

 Score = 1122 bits (580), Expect = 0.0
 Identities = 580/580 (100%)
 Strand = Plus / Minus

                                                                       
Query: 42  aaaaaaaaaaaaacctcaccaagctgtgaagcacagcctgtagccattatggatgaagaa 101
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 aaaaaaaaaaaaacctcaccaagctgtgaagcacagcctgtagccattatggatgaagaa 727

                                                                       
Query: 102 aatgcttagaatagccctatggcttgtcatctgttctactgtgagaactaactaggaacc 161
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 aatgcttagaatagccctatggcttgtcatctgttctactgtgagaactaactaggaacc 667

                                                                       
Query: 162 ccacctaacaataaggattagttcatgactgatataaccttaacatctagctggcaagtt 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ccacctaacaataaggattagttcatgactgatataaccttaacatctagctggcaagtt 607

                                                                       
Query: 222 cactcaactgtaccacatactggacatctcaaatggacaaggaccctttccaattaaaag 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cactcaactgtaccacatactggacatctcaaatggacaaggaccctttccaattaaaag 547

                                                                       
Query: 282 aaataatttacattaccaatctagaaagagactaagtttacaaccccagctaaacacaaa 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aaataatttacattaccaatctagaaagagactaagtttacaaccccagctaaacacaaa 487

                                                                       
Query: 342 atttagacatttataaaccttcagaggagcattctcatattctaagatataaaacttaat 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atttagacatttataaaccttcagaggagcattctcatattctaagatataaaacttaat 427

                                                                       
Query: 402 agtgttgttgagtcaagaccttagggttagctgaatgtatactctaataaatgataccat 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agtgttgttgagtcaagaccttagggttagctgaatgtatactctaataaatgataccat 367

                                                                       
Query: 462 caataagaatacaaactgcaaccccatatgacaacacagatcttcattatttttattgtc 521
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 caataagaatacaaactgcaaccccatatgacaacacagatcttcattatttttattgtc 307

                                                                       
Query: 522 actattacataataaataaatgcacagttaagagagaagagaatattttatctcaataaa 581
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 actattacataataaataaatgcacagttaagagagaagagaatattttatctcaataaa 247

                                                   
Query: 582 aattatgtgtatttgtgtgtgtgtgtgtgtgtgtgtgtgt 621
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aattatgtgtatttgtgtgtgtgtgtgtgtgtgtgtgtgt 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no486_e06.g1 MSMg01no486_e06.g1 CHROMAT_FILE:
MSMg01no486_e06.g1 PHD_FILE: MSMg01no486_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:31 2005
         (669 letters)



>mm_chrX_60360209_60361277
          Length = 1069

 Score = 1255 bits (649), Expect = 0.0
 Identities = 664/669 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcagcaaacttgaatatataacaattaaaggtgcaagtaggtgtcttgaactaccact 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 ttgcagcatacttgaatatataacaattaaaggtgcaagtaggtgtcttgaactaccacc 260

                                                                       
Query: 61  ggtgattagcaagtcccttaatattaggtcatataaatcttgatattcttatataaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgattagcaagtcccttaatattaggtcatataaatcttgatattcttatataaaatg 320

                                                                       
Query: 121 agatatattgtgtaaaatcttccatttatatacatttatcaatactgtataaatgcaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatatattgtgtaaaatcttccatttatatacatttatcaatactgtataaatgcaaat 380

                                                                       
Query: 181 gagctaatttgtattcagaatcaggtaggcagaaacatctatagtgtgtatgctaagtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 gagctaatttgtattcagaatcaggtaggcagaaacatctatagtatgtatgctaagtgg 440

                                                                       
Query: 241 gattctaattcagctcccattttccccctctctgaatttgtcagtgaaacagttaccaat 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 gattctaattcagctcccattttccccctctctgaattagtcagtgaaacagttaccaat 500

                                                                       
Query: 301 ttttctatacttatttattttcagcataaaatggaagctggcaggaaagtttaggcaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttctatacttatttattttcagcataaaatggaagctggcaggaaagtttaggcaaac 560

                                                                       
Query: 361 ttcagacacagggtagcaaatttcatccaaatacatagcagaaataggggcttattcctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcagacacagggtagcaaatttcatccaaatacatagcagaaataggggcttattcctc 620

                                                                       
Query: 421 tgtcctcaagtaatgtgttagccttaagatgaataatctgggaagtgatttcttctgttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtcctcaagtaatgtgttagccttaagatgaataatctgggaagtgatttcttctgttt 680

                                                                       
Query: 481 aattctctatgaaacatgctatatgcagtggaaggtgtgaagcagaagactgaatagata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aattctctatgaaacatgctatatgcagtggaaggtgtgaagcagaagactgaatagata 740

                                                                       
Query: 541 cctcttgtactagtgacatagagagctcggacataacttactaggatagttttaaatcac 600
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 741 cctcttgtactagtgacatagagagctaggacataacttactaggatagttttaaatcac 800

                                                                       
Query: 601 aaagatagtaaaaattattttgtaaaataaaattaacctgctgtagaatttattttcaga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaagatagtaaaaattattttgtaaaataaaattaacctgctgtagaatttattttcaga 860

                    
Query: 661 tgacatttc 669
           |||||||||
Sbjct: 861 tgacatttc 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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