TTGTTCACTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTGCATCTGCACAAGTAAATATTTATTCTGACCAAGTT
TTATCTGGCCAGAAGGTGATTGCCACAGAAAATTTATTTGATCTTCTGTC
TACTCATTTTAGGCTAATATTTATCACAGACAGAAGTAGGCTCTGAAAGA
ATAGCTTTGTATTCCTATTTTGTTTATTTCCAAACAAAAACATTCATTTG
AATGAAGATATAATTAGACTATTTCCCACCTCATTCATCTTCATTCTACT
CTTTCCATGTGCCTCTAGCTCTCTCTGAAATTCCAGGCCTCTTCTCCTTT
AACTATTATTGTACATACATATAAATGAGCCAACATATAAATAGAATCTA
CTGGGCCCATTCAGTGTTGCCTGAATAAATATGTCTCTGGGATGATGCCT
CTCTATTGGAAAACAATAAGGGGACTCATCCCTGAAGCAGAGTAGTATTA
GGAAGTTGAGCTTACTTACTGAGGCCAAGAAAAAGCTTTTACAAATCATG
CTGTACCAAAAATATGGATAAAGTATGGGGCGCAAGGGATGAATTCTGGT
CAATAAAACCATTCTTACACCAATTTAAAAACTTGTCTAATAATGATAGA
CTATATTCAAATTCTCATTTACTTATGTTGGATTTATTTTGACATAAATA
CTGTGGTCATTGTAGGCTACTAGCTCTACTTATTGG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGACACAATGAGAAGACCAAACCTACA
AATAATAAGAGTTGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGCAA
ATATATTCAACAAAATTATAGAAGAAAACTTCCCAACCTAAAGAATGACA
TGCCCATGAACATATAAGAAGCCTACAGAACTCCAAATAGACTGGACCAG
AAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACTAAA
TAAAGAGAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATA
AAGGCAGACCTATCAGAAATACACCAGACTTTTCACCAGAGACTATGAAA
GCCAGAAGAGCCTGGAAAGATGTTATACGGACACTAAGAGAACATAAATG
CCAGCCCAGGCTACTATACCCGCCCAAACTCTCAATTACCATAGATGGAG
AAACGAAAGTATTCCACGACAAAACCAAATTCACATGTTATCTTTCCATG
AATCCAGCCATTCAAAGGATAATAACAGAAAAGAAGCAATACAAGGACGT
AAATCACGCCCTAGAACAAGCAAGAAAGTAATCCCTCAACAAACCAAAAA
GAAGAAAGCCCCAAGAACAGAATTCCAACTCTAACAACAAAAATAAAAGG
AAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATT
CCCCAATAAAAAGACATAAACTAACAG

Query= MSMg01no486_p19.b1 MSMg01no486_p19.b1 CHROMAT_FILE:
MSMg01no486_p19.b1 PHD_FILE: MSMg01no486_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:27 2005
         (577 letters)



>mm_chrX_42336844_42337820
          Length = 977

 Score = 1064 bits (550), Expect = 0.0
 Identities = 568/574 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattgcatctgcacaagtaaatatttattctgaccaagttttatctggccagaa 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattgcatctgcagaagtaaatatttattctgaccaagttttatctggccagaa 263

                                                                       
Query: 64  ggtgattgccacagaaaatttatttgatcttctgtctactcattttaggctaatatttat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 264 ggtgattgccacagaaaatttatttgatcttctgtctactcattttaggctaacatttat 323

                                                                       
Query: 124 cacagacagaagtaggctctgaaagaatagctttgtattcctattttgtttatttccaaa 183
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 324 cacagacagaagtaggctctgaaagaatagctttgtattcctatattgtttatttccaaa 383

                                                                       
Query: 184 caaaaacattcatttgaatgaagatataattagactatttcccacctcattcatcttcat 243
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 384 caaaaacattcatttgaatgaagatataattagactatttcccccctcattcatcttcat 443

                                                                       
Query: 244 tctactctttccatgtgcctctagctctctctgaaattccaggcctcttctcctttaact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctactctttccatgtgcctctagctctctctgaaattccaggcctcttctcctttaact 503

                                                                       
Query: 304 attattgtacatacatataaatgagccaacatataaatagaatctactgggcccattcag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 attattgtacatacatataaatgagccaacatataaatagaatctactgggcccattcag 563

                                                                       
Query: 364 tgttgcctgaataaatatgtctctgggatgatgcctctctattggaaaacaataagggga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgttgcctgaataaatatgtctctgggatgatgcctctctattggaaaacaataagggga 623

                                                                       
Query: 424 ctcatccctgaagcagagtagtattaggaagttgagcttacttactgaggccaagaaaaa 483
           ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 624 ctcatccctgaagcagaatagtattaggaagttgagcttacttaccgaggccaagaaaaa 683

                                                                       
Query: 484 gcttttacaaatcatgctgtaccaaaaatatggataaagtatggggcgcaagggatgaat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcttttacaaatcatgctgtaccaaaaatatggataaagtatggggcgcaagggatgaat 743

                                             
Query: 544 tctggtcaataaaaccattcttacaccaatttaa 577
           ||||||||||||||||||||||||||||||||||
Sbjct: 744 tctggtcaataaaaccattcttacaccaatttaa 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)