BAC Information

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BAC

Clone NameMSMg01-487M12
ChromosomeX (Build37)
Map Location 147,028,332 - 147,028,661
singlet/doubletsinglet
Overlap genePfkfb1
Upstream geneLOC382243, EG666961, EG666968, OTTMUSG00000018988, LOC100039651, EG624568, LOC382244, LOC100039669, EG666982, EG624631, EG546387, LOC333588, Tmem29, LOC100040101, Alas2, Apex2
Downstream geneTro, LOC100039716, Maged2, Itih5l, LOC667021, Gnl3l, Fgd1, Tsr2, LOC100040221, EG667027, Wnk3, LOC675278, ORF34, LOC623804, LOC100039760, Phf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487M12.T7 (MSMg01no487_m12.b1)MSMg01-487M12.TJ (MSMg01no487_m12.g1)
ACCAG566661AG566662
length744751
length of high quality
(start - end)
662 (83 - 744)330 (328 - 657)
definitionCHROMAT_FILE: MSMg01no487_m12.b1 PHD_FILE: MSMg01no487_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:29 2005CHROMAT_FILE: MSMg01no487_m12.g1 PHD_FILE: MSMg01no487_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGAGAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGACATTTCCAAAAATTCGCCAGTGTTCCAACGTCCCAG
AAAATCCTTGAAGCTGACAACTTGGAATTCAGTAGGAATTCAGTAAGAAT
GTTACCTATTCAGTAGCATTCAAATTTACTTCTAGTAGAGACAGTGAAAC
TAATTAGGCTTTACAAAGAACGGAGATGGAATAGCTCAAGGCTGGTCTGC
AGAGTGATTACTTAAGACAGTCTCACCCAAACAAGGGAATACACAATGGC
CTAGCGAATAGGTAGGTTTACCATGTATGATGTTAGGGAATCCCTCCCCC
AGACAGGTTTCTTCACTAGGCCCAAAGAAACAGCATAATCAGGCATTTAC
TAAGAACCCCTGGTGGTGGGCTTAACAATAGACTAGCATTACACCTGGCT
CTCTTCTTAGTGGCAGCAGCCTGGTCCCTGCCTTCTTTTGATGTATACAT
TCCTTTTGTATTGTGTCACTGTAACTCGGTGGATGTATCTTGCCTGGTTT
CTTGTCGCTCTTCTGTATAAAAAGTATGATCTCGACTTCAAAAATTACAT
TCAGATTCTACACAACCTCTTGTGTTGATTTTGTCTGTCATTCGCCAACT
CCTTGTCCACCTGCAACTAGAGACCCATTCTACGCATACAGGGACCAAAA
AGGGTCTATAGCAAGTTTATTTCAGGGACTTCAATTTGATTTCN
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTACACAAAGAATTCTACAGATAAAAGTCTCAAAATAA
CTGGGGGAATGGCAATACAAGTGGGGACAAGTAAAGGGGAGACATCTGGA
TGATATGTCTCTGGCCTATGGATTTGTGCTATTTAGATAGACACCATTGC
CTCTTGTTCTTCATATTCTCCTCGGTGTGGTTTCCACCTCTCCTAAGATC
CCATTCTACCACCTTGGCTCGAAGAGCTTTAGCCCCGGTTTGAATTAGAT
TGTGATGCCTTTAGTGTTGGCTCTTCTCAGCATTGGCGGCCATGGGAGCT
GCGTTTACTTATCGGCTCTCTGCCAAGTAATGACTGCCTTCGCTCTTATT
CCCAAGGTGCCAGATTTACTCTGATTTATTTAACCTTGGTTGGAGAGAGT
ATAAAGATGATCAGATAGTGCCGATCTCTTTAGAGTGCCCAGGACAGCTC
ATTTTAAGAGGGAGAGGTCCCATGGAAAGGCAGGGAGCAGACTCCAGGGA
AAGACAGTTTTACAGTGCCTTGTTGAATAGGGTGAGCGGTGAGGTAGTTT
AAGTCTACTTCCAGTTTCAGCCTTTAATTGCTAGCTCAAAACATTGCATT
TTGAATTTAGGAACAGTATGTTTGTGGTTTTGTTGTGGGGATCCTTGTAC
TGAATCTCTGTTTCTGAGTTGGAGCTTAACATTCTAATTAGGCCTGCTTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_m12.g1 MSMg01no487_m12.g1 CHROMAT_FILE:
MSMg01no487_m12.g1 PHD_FILE: MSMg01no487_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:29 2005
         (330 letters)



>mm_chrX_147028132_147028861
          Length = 730

 Score =  638 bits (330), Expect = 0.0
 Identities = 330/330 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcattggcggccatgggagctgcgtttacttatcggctctctgccaagtaatgactgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagcattggcggccatgggagctgcgtttacttatcggctctctgccaagtaatgactgc 260

                                                                       
Query: 61  cttcgctcttattcccaaggtgccagatttactctgatttatttaaccttggttggagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcgctcttattcccaaggtgccagatttactctgatttatttaaccttggttggagag 320

                                                                       
Query: 121 agtataaagatgatcagatagtgccgatctctttagagtgcccaggacagctcattttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtataaagatgatcagatagtgccgatctctttagagtgcccaggacagctcattttaa 380

                                                                       
Query: 181 gagggagaggtcccatggaaaggcagggagcagactccagggaaagacagttttacagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagggagaggtcccatggaaaggcagggagcagactccagggaaagacagttttacagtg 440

                                                                       
Query: 241 ccttgttgaatagggtgagcggtgaggtagtttaagtctacttccagtttcagcctttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttgttgaatagggtgagcggtgaggtagtttaagtctacttccagtttcagcctttaa 500

                                         
Query: 301 ttgctagctcaaaacattgcattttgaatt 330
           ||||||||||||||||||||||||||||||
Sbjct: 501 ttgctagctcaaaacattgcattttgaatt 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)