CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAAGGGGCG
GAATTCTGCAAAATTTCCTTCAAAAGACCATCAGAAAAAAAGCAGCATAT
AATGAGGCACCACAAGGAGACTCTTATGTAGTAAGATCGAAATAAGGAAA
GATGTCATTTACAAAATAAAATATACTATTTGGGAGGAAAATCTCACTGT
TTGATCTGGTTTCAAAGCTTGATATTAAATCATAAATTTACATTCTTTGT
ATTAAAGATCTTGAAATATTTGGACTAGAAAGGCAGTCTCATAGCCCTTT
GAAAATTATCTAAAGAATTTAAGGAGTACCATAGGACGGTTGCAGAGGAA
CTTAACTGTCATTAACAGTATTATATGCATAACTAAACTACAGAGGGGGA
AAGTTAAGACACCTTATTTGATTGGTTACACTAGAGATAAGTGTTTCTGG
AAGGAGAATACATAATTTATTTAGAAATGCTTTGCTGTAGCAAGCAGCCT
CACTTTTATGCAATTTTAGAAATAGGGTGGGGAAAGAAAATGCAGTCATC
CATCAGTCACTTAGTCATTGAACCTTTTATATTGTACCTGGACATTGGAT
TCCAGAAACAGCAAATGTTTTGTGTATTTGTTACAAGGAATCTCACTCTG
ATAAAACAAGTTACATTGATTCAGTCCTAGTTTTAAAAAGGCAGAACTTC
AGAGTTGTTGATATTTTATCACAGGACGTGAAGTTTAAGACATAGCATTC
TGTGCTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXTCANAAAATGGGTNGAA
CTATAGAAGGTTTCCCAAAATACGTGAAATTCACAGGCAAATGTAAGGAA
ATTGAAAATATCATCCTGAGTGAGGTAACCCAGTCACAAAAGAACACACA
TGATATGTACTCACTGATAAGAGGTTATTAGCCCAAAAGTTCAGAATATC
CAAGATTCAATTCACAGACCATATGAAGCCCAAGAAGAAAGATGACCAAA
GTGTGTATACTTCAGTCCTTCTTAGAAGGGAGAATAAAATATTCAAGGGA
GGAAATACAGAGACAAAGTGTGGATCATAGACTGACAGAAAGGCCATCCA
GAGTCTGCCCAACCTGATGATCCATCCCATATACAGACACCAAACTCAGG
TACTATTGTGGATGCCAACAAATGCTTAATGACAGGAGCCTCGTATGGAT
GTTGCCTCAGAGACTCAGTCAGAGCTTGACAAATATAGAGACAGATGCTT
GCAGCCAACCATTTGACATAGTGTGTGGGTCCCCGATAGAGGAGTTGGAG
AAGAGACTGAAGGAGATGATCCCAATCTTGTTGGCAATATCCAGAGCATC
ATAATCAGGAGCCAATAGAACATATGCCTTCTTCTCTCCATCAGACCTTA
TCAGGGTATTGACTTTGGCCACATCAAATTCCCACTGACCACCAAGTTTG
CCATGAAGAGGATAGAGGACAACAACATGCTTGTGTTCACTGTGGATG

Query= MSMg01no488_l24.b1 MSMg01no488_l24.b1 CHROMAT_FILE:
MSMg01no488_l24.b1 PHD_FILE: MSMg01no488_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:45 2005
         (653 letters)



>mm_chrX_109746914_109747966
          Length = 1053

 Score = 1239 bits (641), Expect = 0.0
 Identities = 650/653 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcagaaaaaaagcagcatataatgaggcaccacaaggagactcttatgtagtaagatcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcagaaaaaaagcagcatataatgaggcaccacaaggagactcttatgtagtaagatcg 260

                                                                       
Query: 61  aaataaggaaagatgtcatttacaaaataaaatatactatttgggaggaaaatctcactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaataaggaaagatgtcatttacaaaataaaatatactatttgggaggaaaatctcactg 320

                                                                       
Query: 121 tttgatctggtttcaaagcttgatattaaatcataaatttacattctttgtattaaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgatctggtttcaaagcttgatattaaatcataaatttacattctttgtattaaagat 380

                                                                       
Query: 181 cttgaaatatttggactagaaaggcagtctcatagccctttgaaaattatctaaagaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgaaatatttggactagaaaggcagtctcatagccctttgaaaattatctaaagaatt 440

                                                                       
Query: 241 taaggagtaccataggacggttgcagaggaacttaactgtcattaacagtattatatgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaggagtaccataggacggttgcagaggaacttaactgtcattaacagtattatatgca 500

                                                                       
Query: 301 taactaaactacagagggggaaagttaagacaccttatttgattggttacactagagata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taactaaactacagagggggaaagttaagacaccttatttgattggttacactagagata 560

                                                                       
Query: 361 agtgtttctggaaggagaatacataatttatttagaaatgctttgctgtagcaagcagcc 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 agtgtttctggaaggagaatacataattgatttagaaatgctttgctgtagcaagcagcc 620

                                                                       
Query: 421 tcacttttatgcaattttagaaatagggtggggaaagaaaatgcagtcatccatcagtca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcacttttatgcaattttagaaatagggtggggaaagaaaatgcagtcatccatcagtca 680

                                                                       
Query: 481 cttagtcattgaaccttttatattgtacctggacattggattccagaaacagcaaatgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttagtcattgaaccttttatattgtacctggacattggattccagaaacagcaaatgtt 740

                                                                       
Query: 541 ttgtgtatttgttacaaggaatctcactctgataaaacaagttacattgattcagtccta 600
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 741 ttgtgtatttgttacaaggaatctcactctggtaaaacaagttacattgattcagtccta 800

                                                                
Query: 601 gttttaaaaaggcagaacttcagagttgttgatattttatcacaggacgtgaa 653
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 801 gttttaaaaaggcagaacttcagagttgttgatattttatcacaggacatgaa 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)