NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATAATTTTCCTTGAACTCTAATACTGAAAATTTGGTAAAAAT
ATTAATTTAATTACTTATATCTGTCAATGAAATTATAAGTGAATGAATAA
AAAGAAAATACAGTAGTTGCTAGGAAAATTTTAACTGAAAGAGAAACATC
AGTGTGTAATTATACAAGGAATCACACACAGAGGCATACACAAGCACACA
CACCCTTATATCCTACGATAATATAAGTGGATTGTTTTTAGTAATTGATA
TTGTTTATTTGGGAAAAAACAGATCTTCTGACAATGATATTAACATTTTC
CACTACGTTGTAAAAAATTATGACTCATAATGAATAAAGGAAGATTGGAG
GAACATCCACACAAATAATATAAATATTGAGAAAATATATAATACTATAA
AAAGCAATGTGCCTGACATATTAAAAATATCATTTGATAAGAAAACTTGC
ACTTGAATAATTTATTTTCCCAATTCTTGTTTGCTTTATTATGTGAAGTA
TGTGAAACAGTTAACAAATTTGGAAAGCCTACTTTAAAGGATGAATACAA
TAGAAATCATCACAAATCCAATGATCTACTGCCCCTTCTCCTTTAATGTA
TGTCTCTCCTATAGCTCTATTCTAGGTTCCTGGCATCCATTTACCCAAAC
ATTATACACAGAAAACATTGAGGATAGGATCCACATATGGGAGAGAACAT
GAGATATG

CATACAGTGGTAGCCTGGCGGCGCCTGGTGTCGAACTTAGGGGACCTATA
GATGATCCCCGACATCTATAAGTTTCAGAAATTTGAGGAAAAGAAACATC
TACTGTGAATACTAAGGATATATGGTGTTGAATAGTGTAGGAAATCAGAG
GTGGAAGAACTGACATTTCCTCTACAAGTCTTTGAAAGGGAAAAAAAAAC
CAACCATCCATGTAAAAAAACCCCTATGGGAACAAACCCCTGGGAATTGG
TCCCAAATTTTAAAAAACCCCCCCTTTTATTTTTTTGGGGCCCTCCGGGA
AAAAATTTAGGGGAAGGGGGGCCTCTTAAAAAAAGGGCCTTTGTTTGGGG
GGCCCGGGGAACCTTTTGGAAAAAAATTTTTTTAAAAACCCCTTTTTGGG
GGGAAAAAAAACCCCAAAAAAACCCCCCCCCCCCCCCCCCCCATAAAAAA
AAGCGCGAGGAAGAATTTTTTTTTTAAATATAAAAAAAAAAAAAAAAATT
TTTTTTGTTTATAAACCAAAAAAAAAAAAATTTTTTTTTTTCTCCTCCTC
TGAGGAGGGGCCCCCCCCCCCCCCCTTTTTTTTCTTCGCCCCAACCACAC
CCAATAAACTTGGGGGGGGGGGCGCCCAACACAAAAAAAAAAAAAAAAAA
CCCACCCCCCCCCCCCCCCCTCGGTANCCCTTCTCCTCCTCCCCCTCCCC
TCCTCCTTTTCTCTTTTTCCCTTTACCACAAAATAAAAAAAAAANTTAAT
TTTCCTTAAAATGTCTGCGGGGGGGGGGG

Query= MSMg01no489_i24.b1 MSMg01no489_i24.b1 CHROMAT_FILE:
MSMg01no489_i24.b1 PHD_FILE: MSMg01no489_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:50 2005
         (648 letters)



>mm_chrX_110855402_110856450
          Length = 1049

 Score = 1139 bits (589), Expect = 0.0
 Identities = 628/645 (97%), Gaps = 8/645 (1%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattccataattttccttgaactctaatactgaaaatttggtaaaaatattaatttaat 64
            ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 gaattccataattgtctttgaactctaatactgaaaatttggtaaaaatattaatttaat 945

                                                                        
Query: 65   tacttatatctgtcaatgaaattataagtgaatgaataaaaagaaaatacagtagttgct 124
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 944  tacttatatctgtcaatggaattataagtgaatgaataaaaagaaaatacagtagttgct 885

                                                                        
Query: 125  aggaaaattttaactgaaagagaaacatcagtgtgtaattatacaaggaatcacacacag 184
            ||||||||||||||||||||||||||||||||||        ||||||||||||||||||
Sbjct: 884  aggaaaattttaactgaaagagaaacatcagtgt-------cacaaggaatcacacacag 832

                                                                        
Query: 185  aggcatacacaagcacacacacccttatatcctacgataatataagtggattgtttttag 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831  aggcatacacaagcacacacacccttatatcctacgataatataagtggattgtttttag 772

                                                                        
Query: 245  taattgatattgtttatttgggaaaaaacagatcttctgacaatgatattaacattttcc 304
            |||||||||||||||||||||||||||||||| |  ||||||||| ||||||||||||||
Sbjct: 771  taattgatattgtttatttgggaaaaaacagaacaactgacaatggtattaacattttcc 712

                                                                        
Query: 305  actacgttgtaaaaaattatgactcataatgaataaaggaagattggaggaacatccaca 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711  actacgttgtaaaaaattatgactcataatgaataaaggaagattggaggaacatccaca 652

                                                                        
Query: 365  caaataatataaatattgagaaaatatataatactataaaaagcaatgtgcctgacatat 424
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651  caaataatataaatagtgagaaaatatataatactataaaaagcaatgtgcctgacatat 592

                                                                        
Query: 425  t-aaaaatatcatttgataagaaaacttgcacttgaataatttattttcccaattcttgt 483
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591  taaaaaatatcatttgataagaaaacttgcacttgaataatttattttcccaattcttgt 532

                                                                        
Query: 484  ttgctttattatgtgaagtatgtgaaacagttaacaaatttggaaagcctactttaaagg 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531  ttgctttattatgtgaagtatgtgaaacagttaacaaatttggaaagcctactttaaagg 472

                                                                        
Query: 544  atgaatacaatagaaatcatcacaaatccaatgatctactgccccttctcctttaatgta 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471  atgaatacaatagaaatcatcacaaatccaatgatctactgccccttctcctttaatgta 412

                                                         
Query: 604  tgtctctcctatagctctattctaggttcctggcatccatttacc 648
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411  tgtctctcctatagctctattctaggttcctggcatccatttacc 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1049
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1039
Effective search space:   662882
Effective search space used:   662882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)