BAC Information

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BAC

Clone NameMSMg01-489J09
ChromosomeX (Build37)
Map Location 157,700,383 - 157,700,688
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041403, LOC100041416, LOC100041427, Gpr64, Phka2, Ppef1, Rs1, Gja6, Scml2
Downstream geneLOC414364, Prkaca-ps1, Rai2, Gm47, Nhs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489J09.T7 (MSMg01no489_j09.b1)MSMg01-489J09.TJ (MSMg01no489_j09.g1)
ACCAG568033AG568034
length762741
length of high quality
(start - end)
607 (71 - 677)283 (324 - 606)
definitionCHROMAT_FILE: MSMg01no489_j09.b1 PHD_FILE: MSMg01no489_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:52 2005CHROMAT_FILE: MSMg01no489_j09.g1 PHD_FILE: MSMg01no489_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGGCTTTCACCTAAACATAATAAAAGCAATCTGCAGCAAA
CAAGTAGCCAACATCAAAGTAAATGGAGCGAAACTCGAAGCAATCCCACT
AAAATGAGGGCCCAGACAAGGCTGCCCACTTTCTCCCTACCTATTCAACA
TTGTACTTGAAGTCCTAGCCAGAGCAATTCGACAACAAAAGAAGATCAAG
GGGATACAAATTGGAAAGGAAGAAGTCAAAATATCACTATTTGCAGATGA
TTCCTCTGAAATCGTAAGTCAGCATCTTGAAGAGATAACTATACCCACGT
TTTTGTGACACTAAAAGATACAAATTACCTTAGACAGATAGGAAAGATCA
GTGGACCAAGAAAATGTATCCATTCTATACACAGCACAACCTTACACAGC
CACAAAGGAGAAGAAAATTATATCTCTTGCAGTAAGGGGGCTAGAACTGG
AGATAATGTTCAGTGAAATAAAGCACATTCAGTAAGACAATATAACATTT
TCCTTCACACACAGAAAAATCAAGATTCAAAGAAACAATATATTAAAATA
AAGGGAAGACTACTTGGGAGGAAGAAGGAGCTTAGTGAAAGGAGAATGGG
AACAAAAGAGGTTAAAGGGGGGAAATAGGAGCATAGAACACTGTAAGACC
TAATGAACCCATTATTTTGTATGCTAATTCAAAGAAAAACACTTTTTCTA
AAGGCCTTATCC
NNAACGATGATGTGGGAGGCCTGGNGGCCGCCTGGTTCCGACCAGAGGTG
AACTANAGAATTTCCAAAGAAAGGGAGGTGCTGNCAGACATGACCTTATA
AGGGGAGAGGACATTTACCATGTCTACTGGGCTATATGATCTCCTGGGGG
TGGGAATCATAGATGGGGGCACAGGGCTATATGCACAGGGACATGCAGGC
CCAGGACATGGGTTTAGTGTCCTTCTGCCAATCTCAGGATGAGATCTGTG
GGGTTTGGATAAGCCTTGACCCTACTCTTACTCCAGCTTTCCATAGTTCC
ATGCCTCCCCAGCTCTCCCTTTTCTCCTTTTTTGTTTTATAAAGGGGAGG
TATCATCATAGTCCTCAGTCTCCAGGTTGGGAGTGGTTTGGTATTGAACC
AATACCTGGTTGTCACCGACTTTGGCAATGTTGCTTACTTGCTGTTTTAG
AAATTGGATGAAATGGGGCCAGGAGGAGGAAGGTTCAATGTTCAGAATGA
AGACAAGGAAAGGAGAAGCCAGGCTACGAGAGGGTTTGAGTATTATGGTG
TGGAGATACCCAGGGCACAGTGGGCTTGGAAATCTCACCAAAGATCCTTA
AGCACCGGGATGTTTTGTTTTACTGGCTCAGATTTGTTAACATTTTTTTT
TGTTTCTTTCCCCCAGTAGCACACAAATCCCTCAGCTATCAGCAGGTCGA
GAGCTTTCCTGTTTAGTAAGGTAACTCTGTGATTGATATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_j09.b1 MSMg01no489_j09.b1 CHROMAT_FILE:
MSMg01no489_j09.b1 PHD_FILE: MSMg01no489_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:52 2005
         (607 letters)



>mm_chrX_157699690_157700696
          Length = 1007

 Score =  584 bits (302), Expect = e-171
 Identities = 305/306 (99%)
 Strand = Plus / Minus

                                                                       
Query: 302 aaattaccttagacagataggaaagatcagtggaccaagaaaatgtatccattctataca 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 aaattaccttagacagataggaaagatcagtggaccaagaaaatgtatccattctataca 940

                                                                       
Query: 362 cagcacaaccttacacagccacaaaggagaagaaaattatatctcttgcagtaagggggc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 cagcacaaccttacacagccacaaaggagaagaaaattatatctcttgcagtaagggggc 880

                                                                       
Query: 422 tagaactggagataatgttcagtgaaataaagcacattcagtaagacaatataacatttt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 tagaactggagataatgttcagtgaaataaagcacattcagtaagacaatataacatttt 820

                                                                       
Query: 482 ccttcacacacagaaaaatcaagattcaaagaaacaatatattaaaataaagggaagact 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 ccttcacacacagaaaaatcaagattcaaagaaacaatatattaaaataaagggaagact 760

                                                                       
Query: 542 acttgggaggaagaaggagcttagtgaaaggagaatgggaacaaaagaggttaaaggggg 601
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 759 acttgggaggaagaaggagcttagtgaaaggagaatgggaacaaaagaggttaagggggg 700

                 
Query: 602 gaaata 607
           ||||||
Sbjct: 699 gaaata 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)