BAC Information

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BAC

Clone NameMSMg01-489K06
ChromosomeX (Build37)
Map Location 37,858,529 - 37,858,935
singlet/doubletsinglet
Overlap genenone
Upstream geneEG636756, EG636766, EG245391, LOC100039769
Downstream geneLOC385344, Gria3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489K06.T7 (MSMg01no489_k06.b1)MSMg01-489K06.TJ (MSMg01no489_k06.g1)
ACCAG568075AG568076
length740731
length of high quality
(start - end)
103 (55 - 157)409 (75 - 483)
definitionCHROMAT_FILE: MSMg01no489_k06.b1 PHD_FILE: MSMg01no489_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:57 2005CHROMAT_FILE: MSMg01no489_k06.g1 PHD_FILE: MSMg01no489_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCCATTTACTTCTGTATCCCATTTTTTTGATTAGGT
TGTTTGTCCTATTAGGGGTTAGCTNTCTTGAGTTCTTTATATATTNNTTA
GATATTNNNATCCCTNNCTATCAGAATGGTNNNGGATTAGTGGAAGATTT
TTTTTTCCCAATCTATAGGTTGCCATGTGTTTTATTACTATGTCTTTGCC
TTACGAGATTTAAGTTCAGAGGTCCATTATCATTCCTGACTTAAGCAAGA
GCATTTGAGTCTGGTAGAAAATTTCCCCTGGTGCAATGGGTTCAAGGTCC
CTTTCCACTTTTTTTTTCCATAAAAATCCGGGGTTTTTGGGGAAAAGCCC
TTGGGACCCCCTTGGGAACTTGGGGACTTTGTGGCCCGGGGGGGGAAAAA
AAAGAGGGGGGGCCAAAATATTTTCTTTTTTTTTTTCCCCCGGGGTGGAA
AAGAAAAGGTGGGGGGGGGGCACCAACCCCCCCCCCCCTTTTTTTTTTTT
GAGAAGAAGGGGGGCCCCCCGGGGGTTTTTCTCAGGGGGGGGAAAAATAT
TTGTGGGGGGGGCCTCTTTTGAGAAAAAAAAAAAAAAAGGGGGGGCCCAA
AAGGGGGGGGGGGGGGGGGTTTTTTTTTTCTCCCGCCCCCCGTTGGGGGG
TGTGGCGCACCCAAAAAAAATAAACCTCCCGCGGGGGGGG
AACCGCCATGCTAGGGTAGGCNGGGGGCTGCTGGTTCCTATCAGCGTGAA
NCAAGAAGTTCAGCGACTGGTGTCGATTGAAAGATTAAGTGTAATACCCA
TTGGCCCCTGAAGACTCATTTTCATAAATGAACATGCACTGCCTATTTGT
CATAATATTTACTTTGTTTTGAATAAATTTTGAGCCATAAACATTTCATA
ATTCCATAAAAAGAGTGTTTATTTCCTTGGTAAATTGAGTTTTCTCTAAG
GGTTTGTGAGAATTAGCCATCAGGGTATATTTTGTTCTTTACTAAGCACA
GGACTTTGTTTTCATCNTCTTTAATTGTATAGTTTTTTGAGGCTAGGGCT
CATATCTTTTTGTTGCCTATTCTATGTGTCGTAATTATGAAAAAATCTTA
TCTCATGGAAGCCCCACTTTATTTTATTTTCACAAAACCTCATTTTAGTC
TCCACCTAGTCCATTCAGAAAGGTATTCAAAACTAAGAGCAAAGTAATAC
CGAATTAGTATTGGGAGCCAGGAAAAGGAAATTTCCTTCCCCCCATTTTC
CTAGGGCCGAAGATTTTGTTTTTTTTTTTTTTTTTTTGGCTTGTATTCAC
CGCAGGAGACTTTGACCCCCTCTTTTTTCTATGGTTATCTCTTGGGCGGT
GGCGTTCATGCGTTTTATATATCTATTCCCCCCACTCCCTATACCCATTT
ATTCTCTGATTTTTTACACATCGATTTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_k06.g1 MSMg01no489_k06.g1 CHROMAT_FILE:
MSMg01no489_k06.g1 PHD_FILE: MSMg01no489_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:57 2005
         (409 letters)



>mm_chrX_37858328_37859135
          Length = 808

 Score =  661 bits (342), Expect = 0.0
 Identities = 393/414 (94%), Gaps = 13/414 (3%)
 Strand = Plus / Minus

                                                                       
Query: 2   attgaaag-attaagtgtaatacccattggcccctgaagactcattttcataaatgaaca 60
           |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 608 attgaaagaattaagtgtaatacccattggcccctgaagattcattttcataaatgaaca 549

                                                                       
Query: 61  tgcactgcctatttgtcataatatttactttgttttgaataaattttgagccataaacat 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 548 tgcactgcctatttgtcataatagttactttgttttgaataaattttgagccataaacat 489

                                                                       
Query: 121 ttcataattccataaaaagagtgtttatttccttggtaaattgagttttctctaagggtt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 488 ttcataattccataaaaagagtgtttatttccttggtaaattgagttttc-caaagggtt 430

                                                                       
Query: 181 tgtgagaattagccatcagggtatattttgttctttactaagcacaggactttgttttca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 429 tgtgagaattagccatcagggtatattttgttctttactaagcacaggactttgttgtca 370

                                                                       
Query: 241 tcnt-ctttaattgtatagttttttgaggctagggctcatatctttttgttgcctattct 299
            | | |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 369 gc-tactttaattgtatagttttttgaggctagggctcagatcattttgttgcctattct 311

                                                                       
Query: 300 atgtgtcgtaattatgaaaaaatcttatctcatggaag----ccccactttattttattt 355
           ||||||| |||||||| |||||||||||||||||||||        ||||||||||||||
Sbjct: 310 atgtgtcataattatg-aaaaatcttatctcatggaagtttt----actttattttattt 256

                                                                 
Query: 356 tcacaaaacctcattttagtctccacctagtccattcagaaaggtattcaaaac 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tcacaaaacctcattttagtctccacctagtccattcagaaaggtattcaaaac 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 808
Length adjustment: 9
Effective length of query: 400
Effective length of database: 799
Effective search space:   319600
Effective search space used:   319600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)