BAC Information

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BAC

Clone NameMSMg01-490O10
ChromosomeX (Build37)
Map Location 96,734,313 - 96,734,859
singlet/doubletsinglet
Overlap genenone
Upstream geneOphn1, Yipf6, LOC100042932, Stard8, LOC436219, Efnb1, Pja1
Downstream geneLOC100042947, Pcna-ps1, EG620592, Eda, Dgat2l4, Otud6a, Igbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490O10.T7 (MSMg01no490_o10.b1)MSMg01-490O10.TJ (MSMg01no490_o10.g1)
ACCAG569022AG569023
length751739
length of high quality
(start - end)
561 (80 - 640)327 (331 - 657)
definitionCHROMAT_FILE: MSMg01no490_o10.b1 PHD_FILE: MSMg01no490_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:37 2005CHROMAT_FILE: MSMg01no490_o10.g1 PHD_FILE: MSMg01no490_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATAATTGCGGCCGCNAAACGACTCACATTTTCAAATTGACCGCG
GAATTCNGTGCTTCGAAAAACACGCTTCNGCTGCAGAAGAGCTAACTAAT
AGTGGCCACTCCCCCCAGGTGACCTTCTCTGGATCACATCAACCCCAGCC
TGTATTTCCATCTTGTGATGCTCTGGCACGTTAAGGTCCCTGAAGCGTTC
CAGGACTCATGTGAATGGTGTTTTCCTGCAGCTCTGAGCATCCCATAATG
GAAAGGGGTCTGGCAGGCAGATTGATCCCATGGGCTGACATGGGATTTAT
TTATTTATTTATTTTTTTATTTATTTATTTATTTATTTATTTATTTATTT
CAGGATCATGTGATGGCTTAGATTGTAGAATGTTTTTTTAACATGTTGAC
TGGGATTGCTTTTATACAAAGGCTATCAAACAGCACACACACACCTAGGG
TAGTCTTTCTCTGGAACTTATGGAAGTAAGAGTACAAAGTCTCCAAACAG
CAAGGAAGTCTTGAAGAGCTTTAGCACAAGGCATTCCTTATTTGTATTCA
GCTCCCATTGTCCTACTCCCCCCCAGAATCTGCCCTGGTCCTAGCCCCAG
TCTGGAACTTCTGGGGGATTTAGAGATGAATGAATCCCAGTCTCTGTCTC
TAACGCCTTCCAGGCTAATAGGGACACAGACACAGAAGCTGTCCCTTTAA
ATAATATACTAGATAGAACAGCAGTAATAATAAGAGCAGATACCAGTTAC
T
NNNNCCCTATGATGTGGGTATCCTGGNGGNTGCCTGGGTCATTATCTTGG
GTNGAACTATAGAAGGTGCGAAAAACATCACTCTTGCACTTGCACATAAG
GCTTGTTTACTAGTTAGGCGCAGTGAAAGCCAGCGCCATCTTATAATGGC
GATTGCTCACGGCACGGTTCTCCACATGTGTCCTTATTACATGTTGGAGC
ATCTTCTGGGTATATGCCCAGGAGTGGTATTGCTGGATCTTCCGGTAGTA
CTATGTTTTATTTTCTGAGGACTGATTTCCAGAGTGGTTGTACCAGCTTT
CAATCCCACCAGCAATGGAGGATTGTTCTTCTTTCTCCACATCTGTGCCA
GCATCTGCTGTCATCTGAGTTTTTTATCTTAGCCATTCTGATTGGTGTGA
GGTGGAATCTCAGGGTTGCCCCGATTTGCATTTTGCTGATGACTAAGGAT
GTTGAACATTTCTTTAGGTGCTTCTCAGGCATTCAGTATTCCTCAGTTGA
GAATTCTTTGTTTGGCTCTATTCTTCATTTTAATAGGGTTAATTGGTTCT
CTGGAGTCTAACTTCTTGAGTTTATTGTATATATTAGATATTAACCATCT
ATCAGATATAGGACTGGTAAAGATCTTTTCCCAATCTGTTGGNTGCCACT
TTGTCCTATTGACAGTGTCCTTTGCCTTACAGAAGCTGTGCAATTTTATG
AGGTCCCTATTAGTCAAATCTTGATCTTAGAGAATAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_o10.b1 MSMg01no490_o10.b1 CHROMAT_FILE:
MSMg01no490_o10.b1 PHD_FILE: MSMg01no490_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:37 2005
         (561 letters)



>mm_chrX_96734113_96735074
          Length = 962

 Score =  949 bits (491), Expect = 0.0
 Identities = 539/563 (95%), Gaps = 18/563 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgcagaagagctaactaatagtggccactccccccaggtgaccttctctggatcacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctgcagaagagctaactaatagtggccactccccccaggtgaccttctctggatcacat 260

                                                                       
Query: 61  caaccccagcctgtatttccatcttgtgatgctctggcacgtt-aaggtccctgaagcgt 119
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 caaccccagcctgtatttccatcttgtgatgctctggcacgtttaaggtccctgaagcgt 320

                                                                       
Query: 120 tccaggactcatgtgaatggtgttttcctgcagctctgagcatcccataatggaaagggg 179
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 tccaggactcatgtgaatggtgttttcctgcagctctgagcatcccaaaatggaaagggg 380

                                                                       
Query: 180 tctggcaggcagattgatcccatgggctgacatgggatttatttatttatttattttttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 381 tctggcaggcagattgatcccatgggctgacatgggatttatttatttatttattt---- 436

                                                                       
Query: 240 atttatttatttatttatttatttatttatttcaggatcatgtgatggcttagattgtag 299
                   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 --------atttatttatttatttatttatttcaggatcatgtgatggcttagattgtag 488

                                                                       
Query: 300 aatgtttttttaacatgttgactgggattgcttttatacaaaggctatcaaacagcacac 359
           |||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 489 aatgtttttt-aacatgttgactgggattgcttttatagaaaggctatcaaactgcacac 547

                                                                       
Query: 360 acacacctagggtagtctttctctggaacttatggaagtaagagtacaaagtctccaaac 419
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 acac--ctagggtagtctttctctggaacttatggaagtaagagtacaaagtctccaaac 605

                                                                       
Query: 420 agcaaggaagtcttgaagagctttagcacaaggcattccttatttgtattcagctcccat 479
           |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 606 agcaaggaagtcttgaagagctttagcacaaggcgttcctt-tttgtattcagctcccat 664

                                                                       
Query: 480 tgtcctactccccccc-agaatctgccctggtcctagccccagtctggaacttctggggg 538
           |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 665 tgtcctactccccccccagaatctgtcctggtcctagccccagtctggaacttctggggg 724

                                  
Query: 539 atttagagatgaatgaatcccag 561
           ||||||||||||||||| |||||
Sbjct: 725 atttagagatgaatgaaccccag 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 962
Length adjustment: 10
Effective length of query: 551
Effective length of database: 952
Effective search space:   524552
Effective search space used:   524552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)