BAC Information

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BAC

Clone NameMSMg01-491H03
ChromosomeX (Build37)
Map Location 151,991,908 - 151,992,554
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434881, LOC100040899, LOC667331, LOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4, LOC667394
Downstream genePtchd1, 4930503H13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491H03.T7 (MSMg01no491_h03.b1)MSMg01-491H03.TJ (MSMg01no491_h03.g1)
ACCAG569438AG569439
length766766
length of high quality
(start - end)
523 (30 - 552)647 (62 - 708)
definitionCHROMAT_FILE: MSMg01no491_h03.b1 PHD_FILE: MSMg01no491_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:22 2005CHROMAT_FILE: MSMg01no491_h03.g1 PHD_FILE: MSMg01no491_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAGGGATTTT
CTGGAACTAGAAAATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAA
CACACATGGTTTGCACTCACTGATAAATGGATATTAACCCAAAAGCTCAG
AGTACCCAACATACAATTCACAGACCATATGAAGCTCAAAAGGAAGGAAG
ACCAAAGTGTGGGTGCTTTGGTCCTTCTTAGAAGGAGTAACAAAATACTC
ACAGGAGCAAATACAGAGACAAAATATGGAGCAGAGACTGAAGGAAAGGT
CCATCCAGAGACTGCCCCACCTGGGGATCCATCTCATATACAGTCACAAA
ATGCAGAAACTATTTTGGATTCCAAGAAGTGCATGCTGACAGGAGCCTTA
TATAGCTATCTCCTGAGAGGCTCTGCCAGGGCTTGATAAATACAGAGGCA
ATGCTCACAGCCAACCATTGGAATGATCACGGCGTCCCCAATGGAGGAGT
TAGAAAAGCACTGAAGGAGCTGAAGGGGTTTGCAACCCTATAGGAAGAAC
ACAATATCAACCAACCAGATCCCCCAGACCTTCCAGAGACTAAACCACCA
ACCAAGGAGTACACATTGGAGAGACCCATGGCTCCAGTCATGTATGTAGT
AGAGTCTGACCTTGTTAGGTATCAGTGGGAGTAGAGGCCCTTGGTCCTGT
GAAGGCTTGATACACCATTGTTTGGGAATTGAAGGCAAGGAGGTGGGATA
TTGTTGGGGTGAATAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCTTTAAACTTTCAACATATTCTTGGTTAGACTTCCATC
CTAAATGGTGAAATACTGCACATGTTCCAGATTTATGGTGGGGGGATATG
ATAATCAGGTTACTACCTTAAAAGATTACACATTAAAAACATAACAATTG
CAGAGGAGGAATAAATACCAGCCCTTGACATGTATCTACAATGAGGTCAT
CTTGCAAACTGGATGCCTTCTGCATATGGAAAATTCTTGGTAATGGGTAA
TATTTTATTTCTCATTTCTGCCCCCCTTTTTTCCATGAGTAACAATGAAA
AGCAAAATTTCTTTAAAAATAATCTTCAGCCTCAGAATGAAGAATAGATG
ATTTGAGTGTTGAATGAGGTTCTTTTAAATCACATCTCTTTATACAATTG
TACATGTTACAACTCATGAAATATTTTTCTCTGGCTGGAATTCAGTCCAG
AATGAAGGGCTGAAAAGAGTGAGCATTGATCAACAGGACAATAGGGCTCG
ACCTTAAGTACAAAACAGTTTTTAAAACTCATTGTAGGTATTTTTGTTTG
GCTTCCACACAAAAATGGATAATCTTATAAAGGGATCACAATGCTAATAC
ATATTGAATCAGAAAATTGAGGAAGGATACAACCAGGAGTCAGTGAATTT
TTACTTGGGTAAATTAAGAAGGCACTTCTTAGGATTAAATAATTATAACC
ATAATAGCTATTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_h03.g1 MSMg01no491_h03.g1 CHROMAT_FILE:
MSMg01no491_h03.g1 PHD_FILE: MSMg01no491_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:22 2005
         (647 letters)



>mm_chrX_151991708_151992754
          Length = 1047

 Score = 1251 bits (647), Expect = 0.0
 Identities = 647/647 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttaaactttcaacatattcttggttagacttccatcctaaatggtgaaatactgcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 tctttaaactttcaacatattcttggttagacttccatcctaaatggtgaaatactgcac 788

                                                                       
Query: 61  atgttccagatttatggtggggggatatgataatcaggttactaccttaaaagattacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 atgttccagatttatggtggggggatatgataatcaggttactaccttaaaagattacac 728

                                                                       
Query: 121 attaaaaacataacaattgcagaggaggaataaataccagcccttgacatgtatctacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 attaaaaacataacaattgcagaggaggaataaataccagcccttgacatgtatctacaa 668

                                                                       
Query: 181 tgaggtcatcttgcaaactggatgccttctgcatatggaaaattcttggtaatgggtaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tgaggtcatcttgcaaactggatgccttctgcatatggaaaattcttggtaatgggtaat 608

                                                                       
Query: 241 attttatttctcatttctgccccccttttttccatgagtaacaatgaaaagcaaaatttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 attttatttctcatttctgccccccttttttccatgagtaacaatgaaaagcaaaatttc 548

                                                                       
Query: 301 tttaaaaataatcttcagcctcagaatgaagaatagatgatttgagtgttgaatgaggtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tttaaaaataatcttcagcctcagaatgaagaatagatgatttgagtgttgaatgaggtt 488

                                                                       
Query: 361 cttttaaatcacatctctttatacaattgtacatgttacaactcatgaaatatttttctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cttttaaatcacatctctttatacaattgtacatgttacaactcatgaaatatttttctc 428

                                                                       
Query: 421 tggctggaattcagtccagaatgaagggctgaaaagagtgagcattgatcaacaggacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tggctggaattcagtccagaatgaagggctgaaaagagtgagcattgatcaacaggacaa 368

                                                                       
Query: 481 tagggctcgaccttaagtacaaaacagtttttaaaactcattgtaggtatttttgtttgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tagggctcgaccttaagtacaaaacagtttttaaaactcattgtaggtatttttgtttgg 308

                                                                       
Query: 541 cttccacacaaaaatggataatcttataaagggatcacaatgctaatacatattgaatca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cttccacacaaaaatggataatcttataaagggatcacaatgctaatacatattgaatca 248

                                                          
Query: 601 gaaaattgaggaaggatacaaccaggagtcagtgaatttttacttgg 647
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gaaaattgaggaaggatacaaccaggagtcagtgaatttttacttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)