BAC Information

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BAC

Clone NameMSMg01-491J17
ChromosomeX (Build37)
Map Location 53,269,732 - 53,269,996
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666151, EG666161, EG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187
Downstream geneLOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491J17.T7 (MSMg01no491_j17.b1)MSMg01-491J17.TJ (MSMg01no491_j17.g1)
ACCAG569561AG569562
length741736
length of high quality
(start - end)
588 (58 - 645)280 (316 - 595)
definitionCHROMAT_FILE: MSMg01no491_j17.b1 PHD_FILE: MSMg01no491_j17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:34 2005CHROMAT_FILE: MSMg01no491_j17.g1 PHD_FILE: MSMg01no491_j17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACAT
TTGTACTATTAATACTACCATGACTGTACTTCTTAAGAACTAACAAGTAG
GTGAAACAATCAGATGAAGTTGTATGCAACCAACCAACGGACAGAATATG
TTGAACCATTGGTTTAATTGGAGAAAAACTGAAGGAGACTGAGGAGGAGA
TCAACCCTGTAGGAGGACTAGATGTCTCCATTAATATGGACCCAGAATTC
TCCCAAATGCTAGACAACCAAAATGGCAGCTTACACCAACTATAGTTAGA
AGGTCCCCAAAACATACACAGAAAAAAAAATTCTTGGTCTCTGTTCAATC
AGAAATGATGCAATGATTCTCAAGAACCTAGAGACCCCAGGGTGTTTAGA
AATCAGATGGAATGGGTACATGCTCTTGGAGACAGGGGATGGCCAGTCGA
TATGGCATGTGGCACAGTAGGAGGGTGGACAGGGTTCAATGAATGAATTA
ATTAATAAATAAAAAAGAATACTGCCAAGTAACCACGCCCCATATACTCT
AATTCTTTAATCATAATCCAAGAAAACTCACATGTTCACATAACAGCACA
CTCAAAAATATAACTAAAAAATACACACACACATATAACTGAAATTCCAT
GATTTTGAAGTTCATTTTACAAAGAAATACAGTGGAACAGAGTTTTTCTT
TTGTTCCATTAATTTACATACTTTTGTTCTCCTAATCTACC
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTCAGGAATTCGCACAGATCACAACATCCTATTCAGATTTCTCTCTCTT
TATCTATTTTTTTCTTGCTGTAGTGGTGGTGATTTTTTAAGAGAGCCTTA
TAAGATTTAATTTACTCTTAGATGAATTTGGACCTTTTGAGAAAGATTGT
ATTCCTACACCATTTTTCGCTCATGGCTTAGAGTATAAGATCATTGGCCC
CTGTGCACAGGTTCCAGGATTCAATTACCAGGGCCCATCTTGTTTGTCAC
AGCCACATTTTTTTGCTGTTTCAGGGGATCTAATACTATCTAACTTCTGA
TCTCTACACGGTCCAGTTTAGTGCACAGGCAGCAGACACACCCCTTCAGG
TAAAACATTCATAAAATAGAAATAATGAAAATTCTACAGTTTACCAATTG
CCATATAAAACTTGATTTCCAAATGATCACACATACTATTAGGAGAGGAC
CTCAAAATGTGGATGTAGGTCAAAAATTTTGATATATTTGATACTTATTT
TTTCTTTCTTTTCTGTTTTACACCACCTAGGACCCCACATCCCAATGACC
TGGAGGAGAGTAAGCCAGAGTTCTTCCATAGTCTTTGCTTCTTTTCTTGT
TTTCCCTTACCAGCTCTGATTAAGGTGTTGTCCACAATTTCCCTATATTA
CTCAGTTTTCACCCTGAAAGTTGAAAACTGATAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_j17.g1 MSMg01no491_j17.g1 CHROMAT_FILE:
MSMg01no491_j17.g1 PHD_FILE: MSMg01no491_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:34 2005
         (280 letters)



>mm_chrX_53269422_53270101
          Length = 680

 Score =  228 bits (118), Expect = 2e-64
 Identities = 232/276 (84%), Gaps = 16/276 (5%)
 Strand = Plus / Minus

                                                                       
Query: 7   caggggatctaatactatctaacttctgatctctacacggtccagttta-gtgcacaggc 65
           |||||||||| |||||| |||||       ||| ||| ||||||| |||  |||| || |
Sbjct: 575 caggggatctgatactagctaac-------ctccacagggtccag-ttacatgcatagcc 524

                                                                       
Query: 66  agcagacacaccccttcaggtaaaaca--ttcataaaatagaaataatgaaaattctaca 123
           | ||||||||||||||||||||||| |  |||||| ||||||||||||||||| | ||||
Sbjct: 523 aacagacacaccccttcaggtaaaa-atgttcatacaatagaaataatgaaaactataca 465

                                                                       
Query: 124 gtttaccaattgccatataaaacttgatttccaaatgatcacacatactattaggagag- 182
           |||||||||||| ||| || |||||||||||  |||||||||||||| ||| |  |||| 
Sbjct: 464 gtttaccaattggcatgtagaacttgatttctgaatgatcacacatattatca--agagc 407

                                                                       
Query: 183 -gacctcaaaatgtggatgtaggtcaaaaattttgatatatttgatacttattttttctt 241
             || ||||||| ||||||||||||||  |||||||||| ||||||||||||||||||||
Sbjct: 406 aaacttcaaaatatggatgtaggtcaaccattttgatatgtttgatacttattttttctt 347

                                               
Query: 242 tcttttctgttttacaccacctaggaccccacatcc 277
           ||||||||||||| |||| ||||| |||||| ||||
Sbjct: 346 tcttttctgttttgcacctcctagaaccccaaatcc 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)