BAC Information

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BAC

Clone NameMSMg01-493I10
ChromosomeX (Build37)
Map Location 118,125,934 - 118,126,439
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674318, EG545741, LOC100039461, Pcdh11x, H2afb3, LOC245576
Downstream geneLOC385419, EG434907, EG245575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493I10.T7 (MSMg01no493_i10.b1)MSMg01-493I10.TJ (MSMg01no493_i10.g1)
ACCAG571023AG571024
length748737
length of high quality
(start - end)
610 (45 - 654)506 (73 - 578)
definitionCHROMAT_FILE: MSMg01no493_i10.b1 PHD_FILE: MSMg01no493_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:06 2005CHROMAT_FILE: MSMg01no493_i10.g1 PHD_FILE: MSMg01no493_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGA
ATTCAATTCCCTTTAAAAAGATAAAGGATAAAAGATTGTATACGTAAACA
GGATACAACATTTTGCTGCATATAAGAAACATACCTCAGTGACTAAGACA
AACATTATCTCAAAGTAAAGGTCTGGAAAAAAATTTTCTAAACAAATGGT
CCCAAGAAAAAGGCACCCACATTTGTAAATGAAACTTTATTTAAGATCAA
AACACATATTGAACCTCACACATTAGTATTGGATGACTTCAACACCTCAT
TATCATCAATGGACAGGTCATTGAAACAGAAACTCAACAGAGATACAGTG
AAACTAACAGAAGTTATGAACCAAATGTATTTAACAGATAGCTACAGAAC
TTTTCACTCCCAAACTAGAGACTGTACCTTCTTCTCAGAACCTCATGGAA
CCTTCTCCAAAATTTACCAAATAATCAGACATAAAATGAACCTTAACAGA
TACATGAAGATTGAATTGAAGGTTGAAGTAATTGCATGCATTCTATCAGA
TCAGGATGGAGTAAGGCTAGACTTCAATAACAACAAAAACAAGACAAAGT
CCACATACTCATAGAAACTACACAACTCTCTGCTCAATGATAACTTGGTC
AGGAAAGAAATAAAGGAATCAAGGACTATATAGGATTCAATTACCATGAA
AATGAAAGCCATATTTAAGAAAAAGATTCATAGCACTAATGGCTTTCC
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGATGCCATAAAAAGGGGCAAATAAGTG
GTATAGAAATGGAGGAAAAAGAGAAACAGAAGATTGTAGGTACAATGAAA
ATAGACATAACTGGAAACTGGTGGGTAAGGAGAAACAACCTGATGTGAGT
AGCAGGTGATTACACCTGAGAATATGGTACCATCCTGGCTTGTTTTGCCA
CTGGAGACCACATCTGGGCCCATCTGGTCTTTTACCACCAAGTTTGGCGG
ATATCCCTGGTCTGTGGTATACTCAGGTGTTGAGCCCTACTTGGCCTTGG
TTTGGGCCCTGGAGACAAACCAGAGTCTGATTCAGTTTTCGAGAACAGTC
ATTTGCCTCTGCTTGAGAATGACTCAACACAGCCTAGATGAATTCGCCAC
TGCATATCTACCACTAACGTCAAAATTTTTCATAGGCCCCGTGAAGTCAC
CCCATATCCCTTGTCATCTCATACCACCCAATATATCATCTTACCACATA
ACCCTATCCCCACCTCCTTGCCCTGCCTATATAAGCAAATTGCTGCCACA
TTTATATGAGATCCTGCTTTCACAAGACTCCCGGCCCAATGAGATTCTTC
CCAGGGTGCAGACACTCACCATCCCACTCATCCCTAGAGAGACTGGGTGG
GTCCAGGCTTCTCTCCTAGCACTACAGGCTGGCAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_i10.g1 MSMg01no493_i10.g1 CHROMAT_FILE:
MSMg01no493_i10.g1 PHD_FILE: MSMg01no493_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:06 2005
         (506 letters)



>mm_chrX_118125734_118126639
          Length = 906

 Score =  924 bits (478), Expect = 0.0
 Identities = 499/506 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatgccataaaaaggggcaaataagtggtatagaaatggaggaaaaagagaaacagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatgccataaaaaggggcaaataagtggtatagaaatggaggaaaaagagaaacagaag 260

                                                                       
Query: 61  attgtaggtacaatgaaaatagacataactggaaactggtgggtaaggagaaacaacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgtaggtacaatgaaaatagacataactggaaactggtgggtaaggagaaacaacctg 320

                                                                       
Query: 121 atgtgagtagcaggtgattacacctgagaatatggtaccatcctggcttgttttgccact 180
           ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 atgtgagtagcaggtgattccacctgagaatatggtaccatcctggcctgttttgccact 380

                                                                       
Query: 181 ggagaccacatctgggcccatctggtcttttaccaccaagtttggcggatatccctggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagaccacatctgggcccatctggtcttttaccaccaagtttggcggatatccctggtc 440

                                                                       
Query: 241 tgtggtatactcaggtgttgagccctacttggccttggtttgggccctggagacaaacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtggtatactcaggtgttgagccctacttggccttggtttgggccctggagacaaacca 500

                                                                       
Query: 301 gagtctgattcagttttcgagaacagtcatttgcctctgcttgagaatgactcaacacag 360
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 501 gagtctgattcaattttcgagaacagtcatttgcctctgcttgagaatgactcaacgcgg 560

                                                                       
Query: 361 cctagatgaattcgccactgcatatctaccactaacgtcaaaatttttcataggccccgt 420
           ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 cctagatgaattcgccactgcctatctaccactaacgtcaaaaattttcataggccccgt 620

                                                                       
Query: 421 gaagtcaccccatatcccttgtcatctcataccacccaatatatcatcttaccacataac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaagtcaccccatatcccttgtcatctcataccacccaatatatcatcttaccacataac 680

                                     
Query: 481 cctatccccacctccttgccctgcct 506
           ||||||||||||||||||||||||||
Sbjct: 681 cctatccccacctccttgccctgcct 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)