Query= MSMg01no493_m07.b1 MSMg01no493_m07.b1 CHROMAT_FILE:
MSMg01no493_m07.b1 PHD_FILE: MSMg01no493_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:26 2005
(577 letters)
>mm_chrX_116922351_116923327
Length = 977
Score = 723 bits (374), Expect = 0.0
Identities = 380/382 (99%)
Strand = Plus / Minus
Query: 196 cagtttcatgagggcccatttagcaattgttgaatatagagcctgagccattggtgttct 255
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 977 cagtttcatgagggcccatttagcaattgttgaatatagagcctgagtcattggtgttct 918
Query: 256 gtacaccaacttgcctcctgtaccaatgtattcaagggtattttccactttcacttctat 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 gtacaccaacttgcctcctgtaccaatgtattcaagggtattttccactttcacttctat 858
Query: 316 gaaatttaatgtatctagttttatgttgatgtccttgatccacttggacttgttttgtgc 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gaaatttaatgtatctagttttatgttgatgtccttgatccacttggacttgttttgtgc 798
Query: 376 aaggcgataaatatagattttatatatcatactacaattacaatgatatcaattatttaa 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aaggcgataaatatagattttatatatcatactacaattacaatgatatcaattatttaa 738
Query: 436 tgtactcattttcaaagtcaaaaacaaaataaagtgtcataaatcaaagtatatttatac 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tgtactcattttcaaagtcaaaaacaaaataaagtgtcataaatcaaagtatatttatac 678
Query: 496 tgttttaatttccctgtgctccacttttatcactgttgttttactttaagtgatatgtat 555
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 677 tgttttaatttccctgtgctccacttttatcactgttgttttactttaagtgatttgtat 618
Query: 556 tattcactattacattcatgtt 577
||||||||||||||||||||||
Sbjct: 617 tattcactattacattcatgtt 596
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_m07.g1 MSMg01no493_m07.g1 CHROMAT_FILE:
MSMg01no493_m07.g1 PHD_FILE: MSMg01no493_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:26 2005
(547 letters)
>mm_chr1_115706900_115707846
Length = 947
Score = 928 bits (480), Expect = 0.0
Identities = 532/552 (96%), Gaps = 7/552 (1%)
Strand = Plus / Plus
Query: 1 ctcagatatggacaaagaaggtgaaggcttgctaattaagggaatctttcatactgtacc 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcagatatggacaaagaaggtgaaagcttgctaattaagggaatctttcatactgtacc 260
Query: 61 tgacccagaagttatccagtcatgatatactttgaacttaattaccagaattttcccaca 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacccagaagttatccagtcatggtatactttgaacttaattaccagaattttcccaca 320
Query: 121 acatgacccatgtaagtggctaatggaactgcttagtgataaaatatgtgcttagcatgt 180
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatgacgcatgtaagtggctaaaggaactgcttagtgataaaatatgtgcttagcatgt 380
Query: 181 gaaagttctggaaacaatcctatgtccctgtcaaatactctaaaaacttctacaatctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaagttctggaaacaatcctatgtccctgtcaaatactctaaaaacttctacaatctta 440
Query: 241 gaatttgggaagggtgtatgatacttccacttgtctactctctgttccctaaagacagta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 gaatttgggaagggtgtatgatacttccacttgtctactctctgttccctaaagaaagta 500
Query: 301 aagggttatagcaatgtagatgagttggtagagtgcttgtctagtacctatcagatcggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagggttatagcaatgtagatgagttggtagagtgcttgtctagtacctatcagatcggg 560
Query: 361 cttgatccactgactaatcccagtgtggtgctatacacctgcaatcccagcattctgaag 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 cttgatccactgactaatcccagtgtggtgccatacacctgcaatcccagcattctgaag 620
Query: 421 gtagaggccgaaccatcacatattcaaagtcattcttatgttcagagtgaagtgaagac- 479
||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 621 gtagaggccaaacaatcacatattcaaagtcattcttatgtacagagtgaagtgaacact 680
Query: 480 -cagtctgacatccattagacctcagattaaaacaaacaaacaaacaaacaaacaaacaa 538
|| |||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct: 681 cca--ctgacatccattagacatcagattaaaacaaacaaacaaacaaaaaaacaaaaaa 738
Query: 539 a---aaaacaga 547
| ||||||||
Sbjct: 739 acaaaaaacaga 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
