BAC Information

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BAC

Clone NameMSMg01-495F08
ChromosomeX (Build37)
Map Location 70,696,750 - 70,697,282
singlet/doubletsinglet
Overlap geneUchl5ip
Upstream geneGabra3, Gabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2
Downstream geneBgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495F08.T7 (MSMg01no495_f08.b1)MSMg01-495F08.TJ (MSMg01no495_f08.g1)
ACCAG572402AG572403
length668755
length of high quality
(start - end)
---536 (80 - 615)
definitionCHROMAT_FILE: MSMg01no495_f08.b1 PHD_FILE: MSMg01no495_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:23 2005CHROMAT_FILE: MSMg01no495_f08.g1 PHD_FILE: MSMg01no495_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCAAAAANNNGCCNNAANAANCCCTTANCCATTTTTTCGANNNNCGNT
TCNTCTTATTTTTCNAANAAAAAATTTAAAAAGATTTTCTTTTTTTTTTT
TTTTATTTTTGGGGTTGTTTCTTCGGGGATGTTTTAATTTTTTTAGACAT
CATTTNCCCCTCTGATATATTTTCATTTTATTTTGGGGGGNNAATTTTTT
TANNNTTAAAATTTTTTTTTTTAAAAATCCTTTTCCCCCCCTCCCCCCCC
CCCCAAAAAAAAAACCCCTTTTTTCNTTTTTTTTTANACANAANANAAAA
CCCAAANNAAAAAATATTTTTTCTAAAACCNCCTCCCATCCCTCCCCCCC
CNCCTTTCCCCCACCTTTCTTTCCCTTTCCCCCATTNTNNCCTCANNNCC
CCCTTTCCCCCCCTTCACTTTTCTCTCTTCCCTTTTTTTTCCTCCNCCCC
CCCCCCCCCCCCTCCTCTTCATCTTTCTACTATNCCCCTTTTCTCCCCCC
ACATTTCCCCTCTTTTTTNTCCCTCCCTCTTCCTCCCTTCCCNCTTTTTT
TTTTTTTTTTTTTCCCCTCTTTAACCCTCAACCCATTTTCACCCCCCTCC
CACTCCCCCCCTCTTTCTATCCTTTTTTCCTCTTCTTTTCCTTAAACATT
TTACTATATTTTTTTTTT
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTACATCTGTATTAACTGT
CTTCCACAGTAGCCGTATTATTTGTGTCCCTACTGGAATATATGAGGGTT
CCTATGTCTCCCCATCCTTGTCATCCTGTGCTATTTTTCCTTCTAACTCT
AGATATCATGGCATGAGTGGAACACGCCTATGCAGTTTAAATTTTCATTG
GTCTTTTGATCAGTGATAAAAAGTGTCTTTCCAGGAACCTCTTGATAGTT
TTTCCTTTCTGCCTTATAGTTACTTAATCCGTCGTGCAAGTGGGCTGTAG
CTGGAGGATAGAAAAGGACAGCTCTGGGAAAGTGAAAAGCTTAGAGAATG
GCAGAGAGGCTGGGCAGTGGTGGCGCACGCCTTTGATCCCAGCACTTGGG
AGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAG
TGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAC
CAAACCAGAGGAGGGGGGAGGAGAGAAAGAGAGAGAGAGAGAGAAAGAGA
GAGAGGAGGAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNGNNNNNNTNNGNN
GNNNNNGNNNGNGNNGGNTTTTTGGNTTTGTTTTTTGGTGTTTTGGTGGT
TTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_f08.g1 MSMg01no495_f08.g1 CHROMAT_FILE:
MSMg01no495_f08.g1 PHD_FILE: MSMg01no495_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:23 2005
         (536 letters)



>mm_chrX_70696548_70697483
          Length = 936

 Score = 1007 bits (521), Expect = 0.0
 Identities = 530/533 (99%), Gaps = 1/533 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gtacatctgtattaactgtcttccacagtagccgtattatttgtgtccctactggaatat 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gtacatctgtattaactgtcttccacagtagccgtattatttgtgtccctactggaatat 262

                                                                       
Query: 63  atgagggttcctatgtctccccatccttgtcatcctgtgctatttttccttctaactcta 122
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atgagggttcctacgtctccccatccttgtcatcctgtgctatttttccttctaactcta 322

                                                                       
Query: 123 gatatcatggcatgagtggaacacgcctatgcagtttaaattttcattggtcttttgatc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gatatcatggcatgagtggaacacgcctatgcagtttaaattttcattggtcttttgatc 382

                                                                       
Query: 183 agtgataaaaagtgtctttccaggaacctcttgatagtttttcctttctgccttatagtt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agtgataaaaagtgtctttccaggaacctcttgatagtttttcctttctgccttatagtt 442

                                                                       
Query: 243 acttaatccgtcgtgcaagtgggctgtagctggaggatagaaaaggacagctctgggaaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acttaatccgtcgtgcaagtgggctgtagctggaggatagaaaaggacagctctgggaaa 502

                                                                       
Query: 303 gtgaaaagcttagagaatggcagagaggctgggcagtggtggcgcacgcctttgatccca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gtgaaaagcttagagaatggcagagaggctgggcagtggtggcgcacgcctttgatccca 562

                                                                       
Query: 363 gcacttgggaggcagaggcaggcagatttctgagtttgaggccagcctggtctacaaagt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gcacttgggaggcagaggcaggcagatttctgagtttgaggccagcctggtctacaaagt 622

                                                                       
Query: 423 gagttccaggacagccagggctacacagagaaaccctgtctcgaaaaaccaaaccagagg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gagttccaggacagccagggctacacagagaaaccctgtctcgaaaaaccaaaccagagg 682

                                                                
Query: 483 aggggggaggagagaaagagagagagagagagaaagagagagag-gaggagga 534
           ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 683 aggggggaggagagaaagagagagagagagagaaaaagagagagagaggagga 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)