BAC Information

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BAC

Clone NameMSMg01-495F17
ChromosomeX (Build37)
Map Location 4,232,038 - 4,232,572
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000016406, LOC673743, OTTMUSG00000016405, OTTMUSG00000016411, LOC668961, LOC100042159, LOC100042168, LOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965, LOC546185
Downstream geneLOC100043933, LOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275, LOC668967, LOC434724, LOC100043935, LOC668968, LOC546182, Mycs, LOC668969, LOC668970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495F17.T7 (MSMg01no495_f17.b1)MSMg01-495F17.TJ (MSMg01no495_f17.g1)
ACCAG572420AG572421
length723735
length of high quality
(start - end)
598 (80 - 677)532 (76 - 607)
definitionCHROMAT_FILE: MSMg01no495_f17.b1 PHD_FILE: MSMg01no495_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:25 2005CHROMAT_FILE: MSMg01no495_f17.g1 PHD_FILE: MSMg01no495_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:25 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCTTCCTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCCACATATCAATCTCTACTAGTGGAGAAGCACTTT
AAAAAAAATCAACATTCTTATTAGTCATCAGGAGAATGCAAATCAAAACA
ACTCTGAGATTCCATCTTAACACCTATCAGAATGGCTAAGATCTAAACTC
ACTCGAGGATGTGGAGAAAGGGGAACATTCCTCCAGTGCTAGAGTGGAAA
CTTGCACAACCACTTTGTAAATCAATTTGGTGGTTTCTTAGAAAATTGGG
AATAGCTCTACCTCAAGACACTTCTGTACCACTCCTGGACATATACCCAA
AGATCAAGTGTCCATAGTATGTGGATTTATTTCTGTGACTTTGATTCTAT
TCTGTTGATCAATCTGTCTATATTTATGTCAATATCTTGTGATTTTTATT
ACTATTGCTCTGAAGTTTAGCTTACAATCAGGGATAGGGATACCACCAGA
AATTATTTAATTACACAGGATTGTTTTAGCTACCCTGGGTTTTTTGTTTT
TCTATATGAAATTGAGAAATGCTCTTTCAAGGTCTGTAATGAATTGTGTT
GGAATTTTGATGTGAATTGCATTGAATCTGTAAATTGATTTTGATAAAAT
GACCATTCTTAGTATGTTACTCCTACCAATCCATGGACAAGGGAGATATT
TCCATCCTAATATCTTCCTCAAT
NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGACAGTGGAAGGGAGGGAGGGCAC
TGGAGGTAGAAAGGTACTGTGGGGATGGAAAGTAGAAAGGTAGTATGAGA
CTCGAGCCCTGAGGAGAATCGCCAAAAGGAAGGATTATGAAATATCACTT
CCTTGTGATGATTTTTTTTCAGGACTGGCCTCAGCAATATGCCAAAGGAT
GCTTCCTTTTTGTTGGATATTTTCTTTATTTACATTTAAAATGTTATCTG
CTTTCCTAGTAATCCCTCTGATTATCACTCTCCCCTATCCTCTCACCCAC
CCCTCCCCCTGATCACCAACATACTCAATCCCACTTTCTGGCCCTGGCAT
TCCCCCACACTGGGGCCTAGAACCTTCACAGGACAAAGGGCCTCTCCTCC
CATTGACATCTGACTAGGTCATCCTCTGTGGCATATGCATCTGAAACCAT
GAGTCCCACCATGTGTTCTCATTGGTTGGTGGTTTAGTTCATGGGAGCTC
TGAGGGGGACTGGTTAGTTGATAATGTTGATCCTCATGTGTGACTGCTAA
ATTCTTCAGCTCCTTAGTTCTTTTCTCAAGCTCCTTCACTGGGGATCTCA
TGCTCTTCCTATGGACAATTGTGAGCATCTATTGTTGTATTTTGTCTGAA
CTGGTTGATCCTCTCACGAAAGAGCTATTCTACGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_f17.g1 MSMg01no495_f17.g1 CHROMAT_FILE:
MSMg01no495_f17.g1 PHD_FILE: MSMg01no495_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:25 2005
         (532 letters)



>mm_chrX_4231838_4232771
          Length = 934

 Score =  899 bits (465), Expect = 0.0
 Identities = 517/535 (96%), Gaps = 3/535 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacagtggaagggagggagggcactggaggtagaaaggtactgtggggatggaaagtag 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 201 agacagtggaagggagggagggcactggaggtataaaggtactgtggggatggaaggtag 260

                                                                       
Query: 61  aaaggtagtatgagactcgagccctgaggagaatcgccaaaaggaaggattatgaaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggtagtatgagactcgagccctgaggagaatcgccaaaaggaaggattatgaaatat 320

                                                                       
Query: 121 cacttccttgtgatga--ttttttttcaggactggcctcagcaatatgccaaaggatgct 178
           ||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 321 cacttccttgtgatgattttttttttcaggactgggctcagcaatatgccaagggatgct 380

                                                                       
Query: 179 tcctttttgttggatattttctttatttacatttaaaatgttatctgctttcctagtaat 238
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tcctttttgttggatattttctttatttacatttaaaatattatctgctttcctagtaat 440

                                                                       
Query: 239 ccctctgattatcactctcccctatcctctcaccca-cccctccccctgatcaccaacat 297
           ||||||||  |||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 441 ccctctgaaaatcactctcccctatcctctcacccaccccctccccctgctcaccaacat 500

                                                                       
Query: 298 actcaatcccactttctggccctggcattcccccacactggggcctagaaccttcacagg 357
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 501 actcaatcccactttctggccctggcattcccccacactggggcatagaaccttcacaga 560

                                                                       
Query: 358 acaaagggcctctcctcccattgacatctgactaggtcatcctctgtggcatatgcatct 417
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 acaaagggcctctcctcccattgacatctgactaggtcatcgtctgtggcatatgcatct 620

                                                                       
Query: 418 gaaaccatgagtcccaccatgtgttctcattggttggtggtttagttcatgggagctctg 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaaccatgagtcccaccatgtgttctcattggttggtggtttagttcatgggagctctg 680

                                                                  
Query: 478 agggggactggttagttgataatgttgatcctcatgtgtgactgctaaattcttc 532
           ||||| | ||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 681 aggggtaatggttagttgataatgttgttcctcatgtgtgactgcaaaattcttc 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 934
Length adjustment: 10
Effective length of query: 522
Effective length of database: 924
Effective search space:   482328
Effective search space used:   482328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)