BAC Information

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BAC

Clone NameMSMg01-495F18
ChromosomeX (Build37)
Map Location 4,768,169 - 4,768,888
singlet/doubletsinglet
Overlap geneLOC100043935
Upstream geneLOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965, LOC546185, LOC100043933, LOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275, LOC668967, LOC434724
Downstream geneLOC668968, LOC546182, Mycs, LOC668969, LOC668970, OTTMUSG00000016453, LOC627412, LOC436185, LOC668971, LOC100043936, LOC668972, Nudt11, LOC208428, AU022751, Nudt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495F18.T7 (MSMg01no495_f18.b1)MSMg01-495F18.TJ (MSMg01no495_f18.g1)
ACCAG572422AG572423
length779781
length of high quality
(start - end)
673 (46 - 718)638 (77 - 714)
definitionCHROMAT_FILE: MSMg01no495_f18.b1 PHD_FILE: MSMg01no495_f18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:25 2005CHROMAT_FILE: MSMg01no495_f18.g1 PHD_FILE: MSMg01no495_f18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:25 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAAATCTGAAGAGAGCAGAGTGAGAAATTGTTCAGGAGAATGCA
GGTTCTCTCAGAGGGAAACAAAGTGCTATGAATATGTGAGTGCAGCTTTG
CACAGAGGCCATTGTGCCTGTGAGTTCATGTTCCTGCTGAGGACAGATTG
CAATGGAGACAAAAGTGTAGGTGCCTGCTGATGTCTCAAGTTGAGGATTA
ACCTGTTAGTGCAGGTGACTGCAGGGGCCAGGGAAGGGACCTGGGCAAAT
AAGTGCAGGAGCCTTCAGAAGACTAGGTTATGTGGGGACAGTGGGCTATA
CACAGACAAGCTGGTCTCCAGTTGAGTTGAGGTCTGAACTCTAGTAGAAC
CTGATGGGTGGCAATTCCCACCTACATGGGACAGAAGGTGTTCCCTCATG
TCTTCTGGCCCCCTGGCTCCTGTTGAATTTACCACCCCCACATACCCCAC
AAGAGAGGATAGTGGCTAGCAGTCATGTACACAATGTCCCAAGCTTCTGA
CCTTCAGGCTAGACTTCTCCCAGTTACCTAGCAACAACAAGATAACAAGT
CCACTATAAGAGGGGCTGCTTGGCCCACTCCTCACTCTTTTAAGCTTTTA
CTTTCTTTAGTCTCTCTCTAAGCCCTCTCTCTCTAAGCCTTCACTTTTCT
TACTCTCTAACTCTCTTTCTCTCTTTCCTTTCCCCCTTCTCTCCTGNTGG
CCATGGCCAGTCTGTCTCTCTCTCTCTCN
CCATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCGCATTT
TTAATGGGGTTATTTGAATTTATGGAGTCTAGCTTCTTAAGCTCTTTGTA
TATATAATACAAATATATATAAATACAAATACTAATATATTGGATATTAG
TCCCCTATCAGATTTAGGGTTGGGAAAAATGCTTTCCCACTCTGTTGGTG
GCCTTTTTGTCTTATTAACAGAGACACTGAAATTTATAGAGGAGTAAGTG
GGGAAAAGCCTCGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAAC
AGCAATGGCTTGTGCTGTAAAATCAAGAATTGACAAATGGGACCTCATAA
AATTGCAAAGCTTCTGTAAGGCACATTGTTTTTGACAAATCAGTTTCCTT
TAGACTACACCTTCAAGCCACTTAAGGTTGCATTTACAACAAAAATTTAT
CATCTAAATATCAACAGTAATGGCAGCATTTATCTTGATAATCTCAGATC
ACAGTGTCTCCTGCTTTAACTATTTCTAATGTTCATTTATGCATTTGTTC
ACTGCTATGTGATCCAAACCCTGATGATCTCCTAGTGCCAGAGACTGCAC
AGATCTAAAACAGATAGTGATAAATACAACAGAATATCTTGGGAATGGAC
TCAGAAGTATGCCATGTGATGTTACCTTAAAGTCAGAATAACTTGCATTT
TATAGCTGGAATAAACTTCAAATTCCTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_f18.b1 MSMg01no495_f18.b1 CHROMAT_FILE:
MSMg01no495_f18.b1 PHD_FILE: MSMg01no495_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:25 2005
         (673 letters)



>mm_chrX_4767965_4769037
          Length = 1073

 Score = 1085 bits (561), Expect = 0.0
 Identities = 656/721 (90%), Gaps = 53/721 (7%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaaatctgaagagagcagagtgagaaattgttcaggagaatgcaggttctctc 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaaacctgaagagagcagagtgagaaattgttcaggagaatgcaggttctctc 264

                                                                       
Query: 65  agagggaaacaaagtgctatgaatatgtgagtgcagctttgcacagaggccattgtgcct 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 agagggaaacaaagtgctatgaatatgtgtgtgcagctttgcacagaggccattgtgcct 324

                                                                       
Query: 125 gtgagttcatgttcctgctgaggacagattgcaatggagacaa-aagtgtaggtgcctgc 183
           |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 325 gtgagttcatgttcctgctgaggacagattgcaatggaga-aagaagtgtaggtgcctgc 383

                                                                       
Query: 184 tgatgtctcaagttgaggattaacctgttagtgcaggtgactgcaggggccagggaaggg 243
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgatgtctcgagttgaggattaacctgttagtgcaggtgactgcaggggccagggaaggg 443

                                                                       
Query: 244 acctgggcaaataagtgcaggagccttcagaagactaggttatgtggggacagtgggcta 303
           |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 444 acctgggcaaataagtgcaggagccttcagaagacttggttatgtggggacattgggcta 503

                                                                       
Query: 304 tacacagacaagctggtctccagttgagttgaggtctgaactctagtagaacctgatggg 363
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 504 aacacagacaagctggtctccagttgagttgaggtctgaactctagtagaacttgatggg 563

                                                                       
Query: 364 tggcaattcccacctacatgggacagaaggtgttccctcatgtcttctggccccctggct 423
           |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 564 tggcaattcccacctacatgggacagaaggcgttcccttatgtcttctggccccctggct 623

                                                                       
Query: 424 cctgttgaatttaccacccccacataccccacaagagaggatagtggctagcagtcatgt 483
           ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 624 cctgttgaagttaccacccccacattccccacaagagaggatagtggctagcagtcatgt 683

                                                                       
Query: 484 acacaatgtcccaagcttctgaccttcaggctagacttctcccagttacctagcaacaac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acacaatgtcccaagcttctgaccttcaggctagacttctcccagttacctagcaacaac 743

                                                                       
Query: 544 aagataacaagtccactataagaggggctgcttggcccactcctcactct---------- 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||          
Sbjct: 744 aagataacaagtccactataagaggggctgcttggcccactcctcactctcttaagcttt 803

                                                                       
Query: 594 -----------------------------------------tttaagcttttactttctt 612
                                                    |||||||||||||||||||
Sbjct: 804 tacttcctttactctccctcttactctctctctcttactcttttaagcttttactttctt 863

                                                                       
Query: 613 tagtctctctctaagccctctctctctaagccttcacttttcttactctctaactctctt 672
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 864 tagtctctctctaagccctctctctctaagccttcacttttcttacactctaactctctt 923

            
Query: 673 t 673
           |
Sbjct: 924 t 924


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)