Query= MSMg01no495_j02.b1 MSMg01no495_j02.b1 CHROMAT_FILE:
MSMg01no495_j02.b1 PHD_FILE: MSMg01no495_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:40 2005
(480 letters)
>mm_chrX_138026279_138027158
Length = 880
Score = 859 bits (444), Expect = 0.0
Identities = 471/484 (97%), Gaps = 8/484 (1%)
Strand = Plus / Plus
Query: 1 gcacctggaactggtgtgactatgggagaaaaaggaaatatcgggttacctggtttgcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcacctggaactggtgtgactatgggagaaaaaggaaatatcgggttacctggtttgcct 260
Query: 61 ggagaaaagggagagcgaggatttcctggaatacaaggtccacctggctttcctggacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagaaaagggagagcgaggatttcctggaatacaaggtccacctggctttcctggacct 320
Query: 121 ccaggtaaaagagatgatggttatatctctatgcttacatagtctatccatacatacaat 180
|||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 321 ccaggtaaaagacatgatggttatatctctatgcttacatagccaatccatacatacaat 380
Query: 181 tatttgatgtgacaactttattaattctgtgaggtttcagaaatacatac----tatttt 236
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 381 tatttgatgtgacaactttattaattctgtgaggtttcagaaatacatacaacatacttt 440
Query: 237 tttttattatattagaaccaattttacattttacaatgaatataaaatcttgaccactct 296
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 t----attatattagaaccaattttacattttacaatgaatataaaatcttgaccactct 496
Query: 297 tacttattatttccagtgaagtgaacaatttcttgctcctattctaattactatacaatt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tacttattatttccagtgaagtgaacaatttcttgctcctattctaattactatacaatt 556
Query: 357 attttgtttcttttttaatagatattttgtttatttacagttcaaatgttattccctttc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 attttgtttcttttttaatagatattttgtttatttacagttcaaatgttattccctttc 616
Query: 417 ctagtttccactctggaacccccatcccatcctccctcttcctgcctctatgagggtgct 476
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctggtttccactctggaacccccatcccatcctccctcttcctgcctctatgagggtgct 676
Query: 477 accc 480
||||
Sbjct: 677 accc 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no495_j02.g1 MSMg01no495_j02.g1 CHROMAT_FILE:
MSMg01no495_j02.g1 PHD_FILE: MSMg01no495_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:40 2005
(226 letters)
>mm_chrX_138191562_138192187
Length = 626
Score = 422 bits (218), Expect = e-122
Identities = 224/226 (99%)
Strand = Plus / Minus
Query: 1 tatccaggcattagtcaaggacttcttttcctccctacacctggctagtattcaaatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tatccaggcattagtcaaggacttcttttcctccctacacctggctagtattcaaatggc 367
Query: 61 tctttacacaatttctaatttctaggtcccctgaaagaatacaccaactgccatacctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tctttacacaatttctaatttctaggtcccctgaaagaatacaccaactgccatacctaa 307
Query: 121 tgacccaaatagcaataagaattgatatttatccatcccttattttcctaagtgacaatt 180
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 306 tgacccaaatagcaataagaattgatatttatccatccctcagtttcctaagtgacaatt 247
Query: 181 atggttatctcttgagatcatgggcagttgaggacaggaatagaaa 226
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atggttatctcttgagatcatgggcagttgaggacaggaatagaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space: 133889
Effective search space used: 133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
