This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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BAC name
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Search Result
BAC
Clone Name
MSMg01-496I16
Chromosome
X (Build37)
Map Location
81,353,159 - 81,484,652
singlet/doublet
doublet
Overlap gene
Dmd
Upstream gene
Tsga8
Downstream gene
LOC100042306
,
LOC100042296
Link
Open Mouse BAC browser
Click to get alignment info.
name
Dmd
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:13405
MGI:94909
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Tsga8
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:60600
MGI:1194903
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs, 1 Protein
name
LOC100042306
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100042306
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 161 ESTs
name
LOC100042296
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100042296
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs
name
Dmd
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142357345
GeneID:13405
MGI:94909
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: dystrophin, muscular dystrophy
transcript_id
: NM_007868.2
name
LOC100042306
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149271794
GeneID:100042306
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 161 ESTs
product
: similar to pORF2
transcript_id
: XM_001478003.1
name
LOC100042296
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149271792
GeneID:100042296
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs
product
: hypothetical protein LOC100042296
transcript_id
: XM_001477992.1
name
Dmd
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6681203
GeneID:13405
MGI:94909
definition
GO_component
: GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005626 - insoluble fraction [Evidence IDA]; GO:0005792 - microsome [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA]; GO:0042383 - sarcolemma [Evidence IDA] [Evidence TAS]; GO:0045202 - synapse [Evidence IDA]
GO_function
: GO:0003779 - actin binding [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005198 - structural molecule activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0007517 - muscle development [Evidence IMP]; GO:0007519 - striated muscle development [Evidence IMP] [Evidence IGI]
codon_start
: 1
note
: Duchenne muscular dystrophy; X-linked muscular dystrophy; dystrophin Dp71
product
: dystrophin, muscular dystrophy
protein_id
: NP_031894.1
name
LOC100042306
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149271795
GeneID:100042306
definition
codon_start
: 1
product
: similar to pORF2
protein_id
: XP_001478053.1
name
LOC100042296
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149271793
GeneID:100042296
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001478042.1
name
Tsga8
(CDS detail)
type
misc_RNA
link
vega
ensembl
MGI
NCBI
xref
GI:149271791
GeneID:60600
MGI:1194903
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs, 1 Protein
product
: testis specific gene A8
transcript_id
: XR_035356.1
clone name
MSMg01-547P17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-457F19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-316F13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-236O10
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-265P19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-144J22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-488A09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-105M17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-262D21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-429F02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-184P14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-482A03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-202D02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-498C18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-492K21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-313J19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-545D02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-313K19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-400F16
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-059M01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-524D02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-061A22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-110A23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-089C06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-543K09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-109B01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-050C24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-193F13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-235M18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-528C19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-181H24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-057O07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-341H20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-336L16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-452M11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-342L10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-294F23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-061D12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-496I16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-455I04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-084M21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-084O19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-095F20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-207H09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-471M03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-319L24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-451D24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-471E18
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-416J03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-464N17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-301M17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-339A16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-391N17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-127A14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-376K03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-352O23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-537N18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-411K06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-125B01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-484D03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-147M24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-112F24
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-474L18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-380A04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-396A04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-415J10
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-136H19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-438P10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-510F22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-122M19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-386J22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-168B12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-485C05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-414F20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-202D07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-296E11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-296E11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-206K07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-201G03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-321E06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-132D20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-250C09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-214E05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-004J20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-062M01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-232B20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-232L01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-044L17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-269P22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-196J16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-057L10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-215O17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-101H06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-028K11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-191D01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-253M02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-317B09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-145L10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-093H18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-295J23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-281E20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-124L03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-308O22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-044P12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-125F23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-135F15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-309O03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-126D04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-100H24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-120A23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-155F17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-139N11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-120G04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-267N08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-313K03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-262K11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-128H13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-266N24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-262C21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-192G20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-142L15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-052P08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-219K20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-342D16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-056E06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-011F21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-265P22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-163N19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-316B13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-035N18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-291H16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-209B24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-133N07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-128B17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-208E22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-120F03
singlet/doublet
singlet
plural/unique
unique