BAC Information

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BAC

Clone NameMSMg01-496N02
ChromosomeX (Build37)
Map Location 164,072,999 - 164,073,315
singlet/doubletsinglet
Overlap geneFrmpd4
Upstream geneLOC641660, LOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8, Tlr7, Prps2, EG627311
Downstream geneEG667822, EG637566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496N02.T7 (MSMg01no496_n02.b1)MSMg01-496N02.TJ (MSMg01no496_n02.g1)
ACCAG573533AG573534
length743743
length of high quality
(start - end)
309 (329 - 637)616 (85 - 700)
definitionCHROMAT_FILE: MSMg01no496_n02.b1 PHD_FILE: MSMg01no496_n02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:17 2005CHROMAT_FILE: MSMg01no496_n02.g1 PHD_FILE: MSMg01no496_n02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGA
GCCGCGGAATTCTCTTTTCCCTATAATTTATTTATTCATGCATCCATTTC
TTTACCCAGAGAACTCCATTTGCTCCTGCTCTTCTTCTCCTCCAGTCTTT
AACATAACAGTGCTGGGAAAAGAAACTAGCCTTGATCATATCTTTCAGGT
TTCCTACTGCTCAGGTACATTTCTAGTCCTCAGGAAAGTTCGAAGGGGCA
TCGATTTACTATTTTCTGCCTCTATGAATACAGTGCCATTCAGTTGCTGC
CCTCAAAGAAATTCCATACCAGTATTTAAAGCCAGAGGTATCAGTATCCA
AGAATAATAGTTTGAAGTCAATATGATTCATGGGGACAAGGGAAACAAAT
GGGGGTCAGGAAATACCAGGAGATGCACATTGGAAACTATTGGGTAGAGG
AGGAGAGAATGGTTCAAGAAAATAGCAAAAACAGTCATAAAGAGATAATA
AAAGCGGTGTTTAGAAAACTGTCCCTTGCAGGGTACTGGCAAGGTTAGAG
GCTAGGAGACAAAATAGTAGCTATGATTATGTCAGAATGCTGTCTGCTCT
CTTCAGCATATTTTTGTGTAAGCAGAACACAGAATCACTAGACAACCCAG
AAACTAAAAATTACCACGTCACTGGAATCCAGTGGAAAAGAAAAAGGAAA
ATGATGATGATGGTAAAACCAGAATGTTTTTCCACATTATATG
TAATGTTGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCT
ACCATCATCATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGT
GTTAGGGTGTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATG
GTGAGTGGTCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCC
ATCTGGCAATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATT
GTTCCTCTGTTGATTTTGTTACCCTCTATCAGCAGGCGTGGGAGACAAGC
TCTCTTCTCTGAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTC
CTCTCTCAGGGAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGC
TGAAGGTGAAGGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTG
GCCAGGAAGGTGGCCAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAA
GCTCTGTGGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAGGATG
GTGCCGCCCCAGAATCTCTGCGACTCTCTCGCCCGTCCCAGAAACAGCTG
GCACTGTATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCC
GGAGCCAAGAAGGCTCCCGCCGGCGCCTGTGTCACAAACCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_n02.b1 MSMg01no496_n02.b1 CHROMAT_FILE:
MSMg01no496_n02.b1 PHD_FILE: MSMg01no496_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:17 2005
         (309 letters)



>mm_chrX_164072807_164073515
          Length = 709

 Score =  563 bits (291), Expect = e-165
 Identities = 307/317 (96%), Gaps = 8/317 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagccagaggtatcagtatccaagaataatagtttgaagtcaatatgattcatggggaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aagccagaggtatcagtatccaagaataatagtttgaagtcaatatgattcatggggaca 252

                                                                       
Query: 61  agggaaacaaatgggggtcaggaaataccaggagatgcacattggaaactattgggtaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 agggaaacaaatgggggtcaggaaataccaggagatgcacattggaaactattgggtaga 312

                                                                       
Query: 121 ggaggagagaatggt--------tcaagaaaatagcaaaaacagtcataaagagataata 172
           |||||||||||||||        |||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggaggagagaatggtatcctgattcaagaaaatagcaaaaacagtcataaagagataata 372

                                                                       
Query: 173 aaagcggtgtttagaaaactgtcccttgcagggtactggcaaggttagaggctaggagac 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaagcggtgtttagaaaactgtcccttgcagggtactggcaaggttagaggctaggagac 432

                                                                       
Query: 233 aaaatagtagctatgattatgtcagaatgctgtctgctctcttcagcatatttttgtgta 292
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 433 aaaatagtagctatgattatgtcagaatgctgtctgctatcttcagcatatttttgcgta 492

                            
Query: 293 agcagaacacagaatca 309
           |||||||||||||||||
Sbjct: 493 agcagaacacagaatca 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)