BAC Information

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BAC

Clone NameMSMg01-497B14
ChromosomeX (Build37)
Map Location 134,356,469 - 134,357,027
singlet/doubletsinglet
Overlap geneIl1rapl2
Upstream genePlp1, Rab9b, 1700014N06Rik, LOC621984, LOC100034363, 4930488E11Rik, LOC666244, 2810402A17Rik, Zcchc18, BC031748, LOC666277, LOC436231, LOC666288, LOC100041260, LOC100041272, LOC669737, Esx1, EG666303
Downstream gene1700025D03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497B14.T7 (MSMg01no497_b14.b1)MSMg01-497B14.TJ (MSMg01no497_b14.g1)
ACCAG573748AG573749
length758760
length of high quality
(start - end)
688 (49 - 736)559 (77 - 635)
definitionCHROMAT_FILE: MSMg01no497_b14.b1 PHD_FILE: MSMg01no497_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:40 2005CHROMAT_FILE: MSMg01no497_b14.g1 PHD_FILE: MSMg01no497_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCC
GCGGAATTCATGTTATTACCGCGTTCTTACGACCGGCCAGGAAAGACGCA
ACAAACCAGAATCTTCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAG
CCAGAGTGCAAGAGAGCAAGCAAGGAAGGAAGGGGGGGAGTGCCAGAACC
CCGTCCCTTTTAAGGAGAATTATCCTCCACCTAGGACGTATTACTTCCTG
ATTGGCTGCAGCCCATCGGCCCAGTTGTCATCACGGGAAAGGCAGAACAC
ATGGTGGGAAAACTGCCCCTGCTTGTGTGCAGACTATGTTTACCACTTAG
AACACAGCTGTCAGTGCCATCTTATAATGGCAAATGTGAGGGCGGCTCCT
CACAGATCCCCCTTTTCTTTTAATAAGAGCAATAGGCCACCCATATTAAT
GAGAGTGGAGATAGAGGTCAAATCCCCAGTGTGCAGGTAAAGGAGCCGTA
CACATAACCTCCTCCCAGGCTCATCACCCAGAGGGGTCCTGGTCTGGTCC
CGTGTTGTTTTTCCTGGGGGAAGGACACTTGAACACTCAACCTTCTTGAA
AGATGACATGTCTCCCTAGAATAGGCTCATATGTGCCGCAGAGCCTTTCT
ACTGCAGTGCTTAGCCGTGCAACTCTCTCATGCTGCTGAAGCACACTCAC
TCTATCCCGTGCAATGAGACTAGCCTCGTGGGGTTTAAGAGCTGAGTGGC
CAGCGACC
NACGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACATGAATGGGGAAGAGATTCAC
AAAGTCCCACCCAGAGCTGAGGAGCTAGTTGAGAGGGCTACTGGCTGCTA
AGTGAAGGAGAATCTGTTGTTTGTTTGTTTGTTTTGTATTGGTTGTTTTG
TTTTATTTTGTTTTGTTTTTGGGAATGTAGCCCATGAGAAGCTTCTCATG
TTCCAGTAGAAGGCCATGGACCCACACACATACTAGCAGCACCAAAAGAA
TTGAGTGGGTTCCAGTCATTGTATGTGTTGTTGCAAGGGAAAAGCGATAG
GAGGGAATCGAAAGACTTGAAAGCAAGGGAGTATGGGATGGCTTTGATCC
AAAGACACTGTATGAGGTACTCAAGCAGTAAAAAAATCAGAAAATAATAC
ATCATCTTTGTTATTTAAGCAATTCCTATCTGGAATGCTCTCCATTCTCT
TCCCCATGTAAAGCTTACCGCTTCACAAGGCCCAGATGAAGCTTCAAACA
CTGTAGACTCTAACGCAGTAGTTCCCAAACATATTCACACACTCAAGTCA
ACCAGGAAGCTTTTAAAAGCTGACAGTGCTGATTCCACACCGCAGATCAA
CTGAACTAGAATTTCCAGAGGGTTCAGTTTGGCTTTCACTCTTTAAGTGT
TTTCTCATGATATATAAGCACCCCTCAGGTTGACTGGTGCTGCTATTAAC
AACTCAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_b14.g1 MSMg01no497_b14.g1 CHROMAT_FILE:
MSMg01no497_b14.g1 PHD_FILE: MSMg01no497_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:40 2005
         (559 letters)



>mm_chrX_134356126_134357084
          Length = 959

 Score = 1027 bits (531), Expect = 0.0
 Identities = 552/559 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatgaatggggaagagattcacaaagtcccacccagagctgaggagctagttgagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 cacatgaatggggaagagattcacaaagtcccacccagagctgaggagctagttgagagg 843

                                                                       
Query: 61  gctactggctgctaagtgaaggagaatctgttgtttgtttgtttgttttgtattggttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 gctactggctgctaagtgaaggagaatctgttgtttgtttgtttgttttgtattggttgt 783

                                                                       
Query: 121 tttgttttattttgttttgtttttgggaatgtagcccatgagaagcttctcatgttccag 180
           |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 782 tttgttttattttgttttgtttttgggaatatagcccctgagaagcttctcatgttccag 723

                                                                       
Query: 181 tagaaggccatggacccacacacatactagcagcaccaaaagaattgagtgggttccagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tagaaggccatggacccacacacatactagcagcaccaaaagaattgagtgggttccagt 663

                                                                       
Query: 241 cattgtatgtgttgttgcaagggaaaagcgataggagggaatcgaaagacttgaaagcaa 300
           || ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 cagtgtatgtggagttgcaagggaaaagcgataggagggaatcgaaagacttgaaagcaa 603

                                                                       
Query: 301 gggagtatgggatggctttgatccaaagacactgtatgaggtactcaagcagtaaaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gggagtatgggatggctttgatccaaagacactgtatgaggtactcaagcagtaaaaaaa 543

                                                                       
Query: 361 tcagaaaataatacatcatctttgttatttaagcaattcctatctggaatgctctccatt 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 542 tcagaaaataatacatcacctttgttatttaagcaattcctatctggaatgttctccatt 483

                                                                       
Query: 421 ctcttccccatgtaaagcttaccgcttcacaaggcccagatgaagcttcaaacactgtag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ctcttccccatgtaaagcttaccgcttcacaaggcccagatgaagcttcaaacactgtag 423

                                                                       
Query: 481 actctaacgcagtagttcccaaacatattcacacactcaagtcaaccaggaagcttttaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 actctaacgcagtagttcccaaacatattcacacactcaagtcaaccaggaagcttttaa 363

                              
Query: 541 aagctgacagtgctgattc 559
           |||||||||||||||||||
Sbjct: 362 aagctgacagtgctgattc 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)