CCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCAATTTTAAATTAATATTTTTATATCCAAGCATTTATT
ATAAATTTCCCTTTCTTAAGTTGTTTCTTTGAAAAAATGACTTCAAGGGA
ACATAAAGGATCATATAACTCCCTTACCAAAGACAAGAGAATGCACTCAC
TAGAATTTTTAACCGCACTTCTTTTATTATCATAAAAAGCTTAAAAATCT
GTAGTGTGTTGGTTTCAATATGAGTAAAAAGTAGCTTGATGTTTTTAGAT
TTTTAGGAGTCTTTGCAAGCAAAGAAACAAACAGAAAGAGCAGAAGTAAT
TTTCTTCATTGATACTGTGTAATATATCTGAGAAATATCTTTCCTTTTTT
CTTATCCATTGTCTTAATTTTTTTAATTTTTAGAAGATAGGAGTTTATAG
ATTGTGATAAATTGTTTGCTTTATTTTATTTTATGTATTCTTCTCTTACA
TACTATATCTCAACTGAAGCCTTCCCATCCTCCCTTTCTTCTAACTTTCT
CCCACCTCTCTTCTCCTCTAGGGCCACTTTTCTTCCATTTCCTTTCAGAA
AAGATCAGGCTTCCCCAGTGATATCAACCAATGGCTGGACTGTAAAAAAA
ATAAGTAAAAATAAATGTAAATAAAAAATGTTTTACAAGAGATTAAATCA
CAATACCAATTTACTCAGATAAGAAATAGTCTAAACAAATAAACTTATAT
CCATGTTGT

NCTTCGATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACAAATGG
CTGAGAAGCACCTGGAAAAATGTTCAGCATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTTCATCTCACACCAGTGAGAATGGCTAT
GTGACAGCAGACGCTGGTGAGGACTGGGAGAAAGAAGAACACTCCTCCAT
TGGTTGTGGGATTGCAAGCTTATACAACCACTCTGGAAATCAGTCTGGCA
GTTCCTCAGAAAATCGGACATAGTACTACGGGAGGATCCCACAATACCTC
TCCTGGGCATATATCCAGAAAATATTCCAACTATTAAGAAAGACACGTGC
TCCATTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGA
ACCTAGATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGTACATAT
ACACAATAGAATACTACTCAGCTATTAAAAATAATGAATTTATTAAATTC
CTGGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAATCCA
ATCACAATAGAACTCAAATGATATGTACTCACTGATAAGTGGATATTAGT
CCAGAAACTTAGAATGCCCAAGATACAAGATACAATTTATGAAACACATG
AAACTCAAGAACCAAGACCAATGTGTGGACACTTTGCCCCTTCTTAGAN

Query= MSMg01no497_f01.b1 MSMg01no497_f01.b1 CHROMAT_FILE:
MSMg01no497_f01.b1 PHD_FILE: MSMg01no497_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:57 2005
         (666 letters)



>mm_chrX_76178344_76179412
          Length = 1069

 Score = 1265 bits (654), Expect = 0.0
 Identities = 662/666 (99%), Gaps = 3/666 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcaattttaaattaatatttttatatccaagcatttattataaatttcccttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcaattttaaattaatatttttatatccaagcatttattataaatttcccttt 263

                                                                       
Query: 64  cttaagttgtttctttgaaaaaatgacttcaagggaacataaaggatcatataactccct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttaagttgtttctttgaaaaaatgacttcaagggaacataaaggatcatataactccct 323

                                                                       
Query: 124 taccaaagacaagagaatgcactcactagaatttttaaccgcacttcttttattatcata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taccaaagacaagagaatgcactcactagaatttttaaccgcacttcttttattatcata 383

                                                                       
Query: 184 aaaagcttaaaaatctgtagtgtgttggtttcaatatgagtaaaaagtagcttgatgttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaagcttaaaaatctgtagtgtgttggtttcaatatgagtaaaaagtagcttgatgttt 443

                                                                       
Query: 244 ttagatttttaggagtctttgcaagcaaagaaacaaacagaaagagcagaagtaattttc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttagatttttaggagtctttgcaagcaaagaaacaaacagaaagagcagaagtaattttc 503

                                                                       
Query: 304 ttcattgatactgtgtaatatatctgagaaatatctttccttttttcttatccattgtct 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 504 ttcattgatactgtgtaatatatctgagaaatatctttccttttttcttatccattgtat 563

                                                                       
Query: 364 taatt---tttttaatttttagaagataggagtttatagattgtgataaattgtttgctt 420
           |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taattgtttttttaatttttagaagataggagtttatagattgtgataaattgtttgctt 623

                                                                       
Query: 421 tattttattttatgtattcttctcttacatactatatctcaactgaagccttcccatcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tattttattttatgtattcttctcttacatactatatctcaactgaagccttcccatcct 683

                                                                       
Query: 481 ccctttcttctaactttctcccacctctcttctcctctagggccacttttcttccatttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccctttcttctaactttctcccacctctcttctcctctagggccacttttcttccatttc 743

                                                                       
Query: 541 ctttcagaaaagatcaggcttccccagtgatatcaaccaatggctggactgtaaaaaaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctttcagaaaagatcaggcttccccagtgatatcaaccaatggctggactgtaaaaaaaa 803

                                                                       
Query: 601 taagtaaaaataaatgtaaataaaaaatgttttacaagagattaaatcacaataccaatt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 taagtaaaaataaatgtaaataaaaaatgttttacaagagattaaatcacaataccaatt 863

                 
Query: 661 tactca 666
           ||||||
Sbjct: 864 tactca 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1069
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1059
Effective search space:   694704
Effective search space used:   694704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)